The detailed information of tRNA gene sequence


Sequence ID>C161051823
Genome IDCP013133
Search identical group
Phylum/ClassAlphaproteobacteria
SpeciesRickettsia rhipicephali HJ#5 [CP013133]
Start position on genome 1280868
End posion on genome 1280793
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
aaaatatgat
tRNA gene sequence 
AGGAGTGTAGCTCAATTGGTAGAGCGCCGGTCTCCAAAACCGGAGGTTGCGGGTTCGATG
CCTGTCGCTCCTGCCA
Downstream region at tRNA end position 
ttataggctt
Secondary structure (Cloverleaf model)
>C161051823	Trp	CCA
                   t      GCCA ttataggctt
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C
                     T + G
                     G - C          G T
                    T     T G T C C     A
      T A A        A      + | + | |     G
    T       C T C G       G C G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTT
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C C A
Intron
Comment/Decision
Genome/Seq. Info.[Ensembl]

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