The detailed information of tRNA gene sequence


Sequence ID>W1610002143
Genome IDAEDA01000009
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermococcus okinawensis IH1 [AEDA]
Start position on genome 49410
End posion on genome 49323
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
atacatcgtg
tRNA gene sequence 
GCGCGGGGTGCTGTGTCTGGTGACACAGGGCGGACTTCAGATCCGTCAAGTTCGTTTGAA
CTCGGGGTTCGATTCCCCCCCCAGCGCCgtt
Downstream region at tRNA end position 
ttttttatat
Secondary structure (Cloverleaf model)
>W1610002143	SeC	TCA
                   g      Cgtt ttttttatat
                     G - C
                     C - G
                     G - C
                     C - G
                     G   A
                     G - C
                     G - C
                     G - C          T T
                    T     C C C C C     A
    T C T G        G        | | | |     G
  G         T G T C       C G G G G     C
  G         | | | |                 T T
  T         A C A G
    G A C          G     CAAGTTCGTTTGAACT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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