The detailed information of tRNA gene sequence


Sequence ID>W1610012842
Genome IDAOIV01000003
Search identical group
Phylum/ClassEuryarchaeota
SpeciesHalogeometricum pallidum JCM 14848 [AOIV]
Start position on genome 97191
End posion on genome 97106
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
cagagcatat
tRNA gene sequence 
GTTGCGGTAGCCAAGCCTGGCCCAAGGCGCAGGGTTGCTAACTCTGTGGCATATCGCCTC
CGGGGTTCGAATCCCCGCCGCAACGCtc
Downstream region at tRNA end position 
gccccgactt
Secondary structure (Cloverleaf model)
>W1610012842	Ser	GCT
                   t      GCtc gccccgactt
                     G - C
                     T - A
                     T - A
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G C C C C     A
    C C G A        A      | | | | |     G
  T         A C C G       C G G G G     C
  G           | | |                 T T
  G         A G G C
    C C C A        G     TGGCATATCGCCTC
                    C - G
                    A - T
                    G - C
                    G + T
                    G - C
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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