The detailed information of tRNA gene sequence


Sequence ID>W122000021
Genome IDAGCQ01000003
Search identical group
Phylum/ClassCalditrichota
SpeciesCaldithrix abyssi DSM 13497 [AGCQ]
Start position on genome 3846220
End posion on genome 3846128
Amino Acid seC
Anticodon TCA
Upstream region at tRNA start position 
attacatttc
tRNA gene sequence 
GGGAGTGCATGGGGCCCGGTGGTCCCCCCGGCCTTCAAAGCCGCGTGTGTCCCGCTTAAG
GGACAGGTGGGTTCGACTCCCACACACTCCCGCta
Downstream region at tRNA end position 
ttttcctgat
Secondary structure (Cloverleaf model)
>W122000021	seC	TCA
                   c      GCta ttttcctgat
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T - A
                     G - C
                     C   A          T C
                    A     C A C C C     A
      C C C        T      | | | | |     G
    G       G G G G       G T G G G     C
    G       + | | |                 T T
    T       T C C C
      G G          C     GTGTGTCCCGCTTAAGGGACAG
                    C   C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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