The detailed information of tRNA gene sequence


Sequence ID>W1720002800
Genome IDMESS01000080
Search identical group
Phylum/ClassCalditrichota
SpeciesCaldithrix sp. RBG_13_44_9 [MESS]
Start position on genome 5786
End posion on genome 5882
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
atatcaaatc
tRNA gene sequence 
GGGAGTGCATGGTCACTGGCGTGGCCCACGGACTTCAAATCCGCTGGCGGGCTCTAATAA
AGTCCGCGGTGAGTTCGATCCTCACGCTCTCCCGCCA
Downstream region at tRNA end position 
tttattctat
Secondary structure (Cloverleaf model)
>W1720002800	SeC	TCA
                   c      GCCA tttattctat
                     G - C
                     G - C
                     G - C
                     A - T
                     G - C
                     T   T
                     G - C
                     C - G          C T
                    A     C A C T C     A
      T C A        T      | | | | |     G
    G       C T G G       G T G A G     C
    G       | + | |                 T T
    C       G G C C
      G T          C     TGGCGGGCTCTAATAAAGTCCGCG
                    A   C
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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