The detailed information of tRNA gene sequence


Sequence ID>W1710042200
Genome IDBBBM01000010
Search identical group
Phylum/ClassThermodesulfobacteriota
SpeciesDesulfothermus okinawensis JCM 13304 [BBBM]
Start position on genome 39697
End posion on genome 39604
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
ttcctcacgc
tRNA gene sequence 
GGAAGCGTTACGTCACCGGTGTGGCGCCTGGACTTCAAATCCAGTGGGCGGCCGAGAGGT
CGCCGGTAGGTTCGACTCCTATACGCTTCCGCCA
Downstream region at tRNA end position 
tttttttttg
Secondary structure (Cloverleaf model)
>W1710042200	SeC(p)	TCA
                   c      GCCA tttttttttg
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     C - G
                     G - C
                     T - A          T C
                    T     T A T C C     A
      C C A        A      + | | | |     G
    G       C T G C       G T A G G     C
    G       | + | |                 T T
    T       G G C G
      G T          C     TGGGCGGCCGAGAGGTCGCCG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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