Composite table

Acidobacteria

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 11.86 Ser AGA 0 TCT 5.49 Tyr ATA 0 TAT 9.75 Cys ACA 0 TGT 1.94 T
GAA 2 TTC 26.82 GGA 2 TCC 18.10 GTA 2 TAC 17.10 GCA 4 TGC 6.51 C
Leu TAA 2 TTA 1.81 TGA 2 TCA 5.47 ochre TTA 0 TAA 1.02 opal Sec TCA 0 TGA 0.99 A
CAA 2 TTG 10.45 CGA 2 TCG 13.42 amber CTA 0 TAG 1.04 Trp CCA 2 TGG 12.69 G
C Leu AAG 0 CTT 12.23 Pro AGG 0 CCT 7.76 His ATG 0 CAT 8.88 Arg ACG 2 CGT 8.04 T
GAG 2 CTC 35.90 GGG 2 CCC 19.66 GTG 2 CAC 13.81 GCG 0 CGC 24.95 C
TAG 2 CTA 3.54 TGG 2 CCA 6.20 Gln TTG 2 CAA 7.60 TCG 0 CGA 4.43 A
CAG 2 CTG 36.16 CGG 2 CCG 20.46 CTG 2 CAG 30.88 CCG 2 CGG 14.10 G
A Ile AAT 0 ATT 11.05 Thr AGT 0 ACT 6.08 Asn ATT 0 AAT 9.63 Ser ACT 0 AGT 4.56 T
GAT 2 ATC 36.15 GGT 2 ACC 31.78 GTT 2 AAC 24.28 GCT 2 AGC 17.10 C
TAT 0 ATA 2.36 TGT 2 ACA 5.92 Lys TTT 2 AAA 8.14 Arg TCT 2 AGA 2.36 A
Met CAT 6 ATG 21.58 CGT 2 ACG 22.29 CTT 2 AAG 29.54 CCT 0 AGG 4.00 G
G Val AAC 0 GTT 10.02 Ala AGC 0 GCT 15.95 Asp ATC 0 GAT 20.59 Gly ACC 0 GGT 11.66 T
GAC 2 GTC 28.74 GGC 2 GCC 42.38 GTC 2 GAC 29.61 GCC 2 GGC 39.01 C
TAC 2 GTA 6.19 TGC 2 GCA 15.91 Glu TTC 2 GAA 17.81 TCC 1 GGA 12.19 A
CAC 2 GTG 26.01 CGC 2 GCG 35.41 CTC 2 GAG 34.88 CCC 2 GGG 17.72 G



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