Composite table

Acidobacteriota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 12.26 Ser AGA 0 TCT 4.46 Tyr ATA 0 TAT 9.44 Cys ACA 0 TGT 2.07 T
GAA 151 TTC 26.84 GGA 143 TCC 13.31 GTA 147 TAC 16.97 GCA 219 TGC 6.79 C
Leu TAA 139 TTA 2.27 TGA 151 TCA 4.21 ochre TTA 1 TAA 0.73 opal Sec TCA 88 TGA 1.29 A
CAA 143 TTG 11.92 CGA 142 TCG 16.79 amber CTA 0 TAG 0.88 Trp CCA 138 TGG 13.90 G
C Leu AAG 0 CTT 11.37 Pro AGG 0 CCT 6.58 His ATG 0 CAT 7.68 Arg ACG 155 CGT 8.12 T
GAG 148 CTC 30.69 GGG 150 CCC 17.30 GTG 157 CAC 13.98 GCG 2 CGC 31.28 C
TAG 150 CTA 2.85 TGG 159 CCA 5.49 Gln TTG 164 CAA 8.33 TCG 105 CGA 5.65 A
CAG 163 CTG 42.05 CGG 140 CCG 24.53 CTG 149 CAG 27.70 CCG 150 CGG 16.90 G
A Ile AAT 0 ATT 12.85 Thr AGT 0 ACT 5.48 Asn ATT 0 AAT 10.18 Ser ACT 2 AGT 4.37 T
GAT 115 ATC 33.54 GGT 137 ACC 24.56 GTT 162 AAC 20.85 GCT 147 AGC 16.28 C
TAT 3 ATA 2.76 TGT 152 ACA 6.02 Lys TTT 152 AAA 11.15 Arg TCT 138 AGA 2.80 A
Met CAT 450 ATG 20.82 CGT 138 ACG 21.63 CTT 139 AAG 24.62 CCT 102 AGG 4.13 G
G Val AAC 1 GTT 10.42 Ala AGC 0 GCT 12.23 Asp ATC 0 GAT 20.60 Gly ACC 0 GGT 11.09 T
GAC 152 GTC 28.32 GGC 147 GCC 43.62 GTC 160 GAC 31.31 GCC 158 GGC 41.59 C
TAC 149 GTA 5.46 TGC 112 GCA 12.86 Glu TTC 177 GAA 23.47 TCC 122 GGA 13.83 A
CAC 146 GTG 30.05 CGC 155 GCG 40.37 CTC 144 GAG 33.33 CCC 142 GGG 14.79 G



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