Composite table

Calditrichota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 37.93 Ser AGA 0 TCT 8.63 Tyr ATA 0 TAT 23.37 Cys ACA 0 TGT 3.54 T
GAA 1 TTC 14.13 GGA 1 TCC 12.10 GTA 1 TAC 15.32 GCA 1 TGC 3.91 C
Leu TAA 1 TTA 22.65 TGA 1 TCA 6.82 ochre TTA 0 TAA 1.62 opal Sec TCA 1 TGA 0.88 A
CAA 1 TTG 19.35 CGA 1 TCG 8.66 amber CTA 0 TAG 0.49 Trp CCA 1 TGG 12.67 G
C Leu AAG 0 CTT 12.91 Pro AGG 0 CCT 7.88 His ATG 0 CAT 12.85 Arg ACG 1 CGT 9.03 T
GAG 1 CTC 7.45 GGG 1 CCC 11.90 GTG 1 CAC 7.06 GCG 0 CGC 15.20 C
TAG 1 CTA 4.42 TGG 1 CCA 5.86 Gln TTG 1 CAA 17.94 TCG 0 CGA 5.10 A
CAG 1 CTG 36.80 CGG 1 CCG 15.84 CTG 1 CAG 25.03 CCG 1 CGG 10.01 G
A Ile AAT 0 ATT 38.47 Thr AGT 0 ACT 8.89 Asn ATT 0 AAT 30.06 Ser ACT 0 AGT 8.83 T
GAT 1 ATC 27.28 GGT 1 ACC 22.22 GTT 1 AAC 16.36 GCT 1 AGC 13.42 C
TAT 0 ATA 9.89 TGT 1 ACA 6.34 Lys TTT 1 AAA 47.70 Arg TCT 1 AGA 6.77 A
Met CAT 3 ATG 21.75 CGT 1 ACG 10.57 CTT 1 AAG 17.83 CCT 1 AGG 3.80 G
G Val AAC 0 GTT 18.55 Ala AGC 0 GCT 13.47 Asp ATC 0 GAT 35.48 Gly ACC 0 GGT 14.07 T
GAC 1 GTC 9.89 GGC 1 GCC 30.66 GTC 1 GAC 16.37 GCC 1 GGC 24.87 C
TAC 1 GTA 12.40 TGC 1 GCA 10.12 Glu TTC 1 GAA 46.72 TCC 1 GGA 17.14 A
CAC 1 GTG 21.64 CGC 1 GCG 13.61 CTC 1 GAG 18.56 CCC 1 GGG 8.89 G



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