Composite table

Calditrichota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 35.51 Ser AGA 0 TCT 9.51 Tyr ATA 0 TAT 23.93 Cys ACA 0 TGT 3.96 T
GAA 2 TTC 15.16 GGA 2 TCC 11.35 GTA 2 TAC 14.37 GCA 3 TGC 3.82 C
Leu TAA 3 TTA 22.30 TGA 2 TCA 9.57 ochre TTA 0 TAA 1.59 opal Sec TCA 2 TGA 0.86 A
CAA 1 TTG 19.19 CGA 2 TCG 8.22 amber CTA 0 TAG 0.50 Trp CCA 2 TGG 13.13 G
C Leu AAG 0 CTT 14.15 Pro AGG 0 CCT 8.71 His ATG 0 CAT 12.99 Arg ACG 2 CGT 9.11 T
GAG 1 CTC 8.12 GGG 1 CCC 10.68 GTG 2 CAC 6.83 GCG 0 CGC 12.91 C
TAG 2 CTA 5.45 TGG 2 CCA 7.36 Gln TTG 2 CAA 17.72 TCG 1 CGA 5.51 A
CAG 2 CTG 31.41 CGG 1 CCG 14.06 CTG 1 CAG 21.94 CCG 2 CGG 8.60 G
A Ile AAT 0 ATT 38.19 Thr AGT 0 ACT 10.66 Asn ATT 0 AAT 31.38 Ser ACT 0 AGT 9.88 T
GAT 1 ATC 25.90 GGT 2 ACC 19.82 GTT 3 AAC 16.28 GCT 2 AGC 12.14 C
TAT 0 ATA 12.82 TGT 2 ACA 9.65 Lys TTT 2 AAA 45.26 Arg TCT 1 AGA 7.77 A
Met CAT 7 ATG 22.19 CGT 2 ACG 9.59 CTT 2 AAG 17.46 CCT 1 AGG 4.39 G
G Val AAC 0 GTT 19.60 Ala AGC 0 GCT 15.30 Asp ATC 0 GAT 37.92 Gly ACC 0 GGT 17.36 T
GAC 1 GTC 11.05 GGC 2 GCC 25.98 GTC 3 GAC 16.93 GCC 3 GGC 22.06 C
TAC 1 GTA 13.45 TGC 1 GCA 13.46 Glu TTC 1 GAA 46.93 TCC 2 GGA 18.73 A
CAC 2 GTG 19.05 CGC 1 GCG 12.79 CTC 1 GAG 18.55 CCC 2 GGG 8.91 G



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