Composite table

Candidatius Mariprofundia

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 22.31 Ser AGA 0 TCT 7.67 Tyr ATA 0 TAT 16.89 Cys ACA 0 TGT 5.50 T
GAA 7 TTC 14.34 GGA 6 TCC 10.84 GTA 6 TAC 8.53 GCA 8 TGC 5.76 C
Leu TAA 6 TTA 7.32 TGA 7 TCA 10.82 ochre TTA 0 TAA 1.28 opal Sec TCA 0 TGA 1.35 A
CAA 8 TTG 16.43 CGA 3 TCG 9.38 amber CTA 0 TAG 0.47 Trp CCA 7 TGG 12.87 G
C Leu AAG 0 CTT 15.56 Pro AGG 0 CCT 9.16 His ATG 0 CAT 17.45 Arg ACG 6 CGT 17.09 T
GAG 8 CTC 13.77 GGG 6 CCC 7.71 GTG 6 CAC 9.29 GCG 0 CGC 19.98 C
TAG 6 CTA 4.44 TGG 6 CCA 7.60 Gln TTG 7 CAA 11.06 TCG 0 CGA 4.56 A
CAG 7 CTG 46.82 CGG 3 CCG 16.55 CTG 6 CAG 29.80 CCG 7 CGG 7.13 G
A Ile AAT 0 ATT 28.60 Thr AGT 0 ACT 6.53 Asn ATT 0 AAT 18.98 Ser ACT 0 AGT 10.75 T
GAT 9 ATC 27.14 GGT 6 ACC 20.87 GTT 7 AAC 13.77 GCT 8 AGC 12.68 C
TAT 0 ATA 5.45 TGT 8 ACA 11.67 Lys TTT 6 AAA 25.49 Arg TCT 6 AGA 4.65 A
Met CAT 21 ATG 30.14 CGT 5 ACG 9.30 CTT 6 AAG 18.31 CCT 7 AGG 4.18 G
G Val AAC 0 GTT 16.66 Ala AGC 0 GCT 21.10 Asp ATC 0 GAT 43.82 Gly ACC 0 GGT 27.53 T
GAC 7 GTC 14.84 GGC 6 GCC 35.33 GTC 8 GAC 12.90 GCC 12 GGC 27.54 C
TAC 10 GTA 10.86 TGC 9 GCA 25.07 Glu TTC 5 GAA 29.94 TCC 6 GGA 9.02 A
CAC 1 GTG 26.83 CGC 0 GCG 18.97 CTC 6 GAG 31.91 CCC 6 GGG 9.40 G



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