Composite table

Chlorobiota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 20.90 Ser AGA 0 TCT 6.98 Tyr ATA 0 TAT 15.18 Cys ACA 0 TGT 3.71 T
GAA 38 TTC 22.71 GGA 39 TCC 11.40 GTA 37 TAC 15.51 GCA 42 TGC 6.95 C
Leu TAA 35 TTA 5.94 TGA 36 TCA 10.85 ochre TTA 0 TAA 1.17 opal Sec TCA 1 TGA 1.52 A
CAA 40 TTG 9.85 CGA 37 TCG 14.32 amber CTA 0 TAG 0.44 Trp CCA 37 TGG 10.83 G
C Leu AAG 0 CTT 25.17 Pro AGG 0 CCT 8.81 His ATG 0 CAT 11.12 Arg ACG 34 CGT 9.80 T
GAG 40 CTC 26.55 GGG 40 CCC 10.87 GTG 37 CAC 9.68 GCG 0 CGC 16.69 C
TAG 40 CTA 2.14 TGG 37 CCA 6.26 Gln TTG 40 CAA 8.38 TCG 5 CGA 5.02 A
CAG 39 CTG 30.21 CGG 40 CCG 17.02 CTG 28 CAG 23.99 CCG 38 CGG 11.56 G
A Ile AAT 0 ATT 24.11 Thr AGT 0 ACT 7.00 Asn ATT 0 AAT 16.51 Ser ACT 0 AGT 7.35 T
GAT 47 ATC 30.70 GGT 37 ACC 22.24 GTT 36 AAC 21.28 GCT 36 AGC 15.55 C
TAT 4 ATA 10.05 TGT 39 ACA 11.31 Lys TTT 46 AAA 29.45 Arg TCT 40 AGA 7.00 A
Met CAT 115 ATG 25.11 CGT 42 ACG 12.69 CTT 37 AAG 21.28 CCT 40 AGG 8.24 G
G Val AAC 0 GTT 19.59 Ala AGC 0 GCT 15.92 Asp ATC 0 GAT 28.96 Gly ACC 0 GGT 16.67 T
GAC 40 GTC 20.67 GGC 39 GCC 29.11 GTC 40 GAC 24.18 GCC 44 GGC 27.41 C
TAC 38 GTA 9.55 TGC 45 GCA 21.53 Glu TTC 36 GAA 35.89 TCC 36 GGA 17.43 A
CAC 30 GTG 19.25 CGC 37 GCG 18.88 CTC 30 GAG 30.26 CCC 40 GGG 13.29 G



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