Composite table

Coprothermobacterota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 25.45 Ser AGA 0 TCT 12.56 Tyr ATA 0 TAT 14.97 Cys ACA 0 TGT 3.48 T
GAA 4 TTC 18.08 GGA 5 TCC 8.85 GTA 4 TAC 18.79 GCA 4 TGC 4.33 C
Leu TAA 5 TTA 16.49 TGA 4 TCA 9.68 ochre TTA 0 TAA 1.41 opal Sec TCA 4 TGA 1.08 A
CAA 4 TTG 24.80 CGA 4 TCG 4.58 amber CTA 0 TAG 0.86 Trp CCA 4 TGG 11.92 G
C Leu AAG 0 CTT 23.86 Pro AGG 0 CCT 15.26 His ATG 0 CAT 8.69 Arg ACG 4 CGT 7.91 T
GAG 4 CTC 11.17 GGG 5 CCC 9.88 GTG 4 CAC 8.20 GCG 0 CGC 6.23 C
TAG 4 CTA 12.75 TGG 4 CCA 12.57 Gln TTG 4 CAA 16.22 TCG 4 CGA 4.06 A
CAG 4 CTG 17.85 CGG 5 CCG 5.29 CTG 6 CAG 16.36 CCG 4 CGG 2.86 G
A Ile AAT 0 ATT 26.69 Thr AGT 0 ACT 15.02 Asn ATT 0 AAT 16.75 Ser ACT 0 AGT 12.56 T
GAT 1 ATC 14.08 GGT 4 ACC 13.02 GTT 4 AAC 20.12 GCT 4 AGC 12.72 C
TAT 0 ATA 22.10 TGT 4 ACA 14.90 Lys TTT 4 AAA 32.21 Arg TCT 4 AGA 14.72 A
Met CAT 12 ATG 24.77 CGT 4 ACG 8.96 CTT 4 AAG 27.36 CCT 4 AGG 10.51 G
G Val AAC 0 GTT 26.25 Ala AGC 0 GCT 29.65 Asp ATC 0 GAT 29.26 Gly ACC 0 GGT 25.91 T
GAC 5 GTC 10.36 GGC 4 GCC 15.41 GTC 4 GAC 21.11 GCC 4 GGC 18.80 C
TAC 4 GTA 22.37 TGC 1 GCA 22.51 Glu TTC 4 GAA 45.01 TCC 4 GGA 18.03 A
CAC 4 GTG 28.02 CGC 4 GCG 8.61 CTC 4 GAG 26.07 CCC 4 GGG 9.64 G



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