Composite table

Deinococcota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 9.59 Ser AGA 0 TCT 1.65 Tyr ATA 0 TAT 3.95 Cys ACA 0 TGT 0.79 T
GAA 122 TTC 25.08 GGA 118 TCC 11.91 GTA 124 TAC 22.46 GCA 122 TGC 4.52 C
Leu TAA 120 TTA 1.68 TGA 119 TCA 1.27 ochre TTA 0 TAA 0.72 opal Sec TCA 0 TGA 1.79 A
CAA 122 TTG 11.32 CGA 107 TCG 7.85 amber CTA 0 TAG 0.96 Trp CCA 120 TGG 14.36 G
C Leu AAG 0 CTT 13.19 Pro AGG 0 CCT 5.86 His ATG 0 CAT 3.47 Arg ACG 127 CGT 5.03 T
GAG 118 CTC 36.56 GGG 124 CCC 34.44 GTG 130 CAC 17.03 GCG 1 CGC 34.89 C
TAG 119 CTA 3.90 TGG 116 CCA 3.19 Gln TTG 119 CAA 5.57 TCG 0 CGA 2.75 A
CAG 127 CTG 61.95 CGG 117 CCG 17.50 CTG 118 CAG 28.64 CCG 116 CGG 25.94 G
A Ile AAT 0 ATT 5.76 Thr AGT 0 ACT 2.00 Asn ATT 0 AAT 2.62 Ser ACT 0 AGT 2.55 T
GAT 121 ATC 26.29 GGT 117 ACC 32.71 GTT 121 AAC 18.40 GCT 121 AGC 19.39 C
TAT 6 ATA 1.51 TGT 116 ACA 1.64 Lys TTT 115 AAA 6.61 Arg TCT 117 AGA 1.31 A
Met CAT 396 ATG 16.67 CGT 121 ACG 12.93 CTT 115 AAG 24.79 CCT 120 AGG 8.60 G
G Val AAC 0 GTT 4.98 Ala AGC 0 GCT 7.94 Asp ATC 0 GAT 8.32 Gly ACC 0 GGT 7.33 T
GAC 118 GTC 21.55 GGC 127 GCC 69.11 GTC 165 GAC 34.32 GCC 272 GGC 43.84 C
TAC 115 GTA 3.90 TGC 124 GCA 5.49 Glu TTC 125 GAA 18.38 TCC 119 GGA 7.76 A
CAC 119 GTG 48.18 CGC 118 GCG 33.21 CTC 155 GAG 50.80 CCC 119 GGG 31.30 G



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