Composite table

Deinococcota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 1 TTT 8.79 Ser AGA 0 TCT 1.94 Tyr ATA 0 TAT 3.85 Cys ACA 0 TGT 0.91 T
GAA 251 TTC 24.62 GGA 239 TCC 10.55 GTA 255 TAC 21.39 GCA 250 TGC 4.64 C
Leu TAA 245 TTA 1.51 TGA 243 TCA 1.55 ochre TTA 0 TAA 0.70 opal Sec TCA 2 TGA 1.94 A
CAA 246 TTG 9.16 CGA 221 TCG 8.12 amber CTA 0 TAG 0.75 Trp CCA 240 TGG 14.21 G
C Leu AAG 3 CTT 9.57 Pro AGG 0 CCT 5.32 His ATG 0 CAT 3.70 Arg ACG 278 CGT 5.59 T
GAG 236 CTC 32.59 GGG 254 CCC 31.31 GTG 273 CAC 17.48 GCG 1 CGC 36.54 C
TAG 243 CTA 2.86 TGG 246 CCA 3.45 Gln TTG 246 CAA 5.30 TCG 0 CGA 2.41 A
CAG 266 CTG 68.73 CGG 241 CCG 20.02 CTG 241 CAG 30.80 CCG 238 CGG 23.92 G
A Ile AAT 0 ATT 6.69 Thr AGT 0 ACT 2.44 Asn ATT 0 AAT 3.39 Ser ACT 0 AGT 3.57 T
GAT 247 ATC 25.94 GGT 238 ACC 33.73 GTT 251 AAC 18.92 GCT 245 AGC 20.82 C
TAT 9 ATA 1.22 TGT 237 ACA 2.21 Lys TTT 238 AAA 7.02 Arg TCT 243 AGA 1.36 A
Met CAT 796 ATG 17.19 CGT 245 ACG 15.67 CTT 237 AAG 22.02 CCT 246 AGG 6.39 G
G Val AAC 0 GTT 4.53 Ala AGC 0 GCT 7.66 Asp ATC 0 GAT 8.45 Gly ACC 0 GGT 7.59 T
GAC 240 GTC 23.12 GGC 267 GCC 67.03 GTC 371 GAC 37.79 GCC 535 GGC 47.67 C
TAC 239 GTA 3.20 TGC 258 GCA 6.46 Glu TTC 261 GAA 18.96 TCC 243 GGA 7.34 A
CAC 244 GTG 47.91 CGC 240 GCG 37.59 CTC 270 GAG 44.55 CCC 238 GGG 27.38 G



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