Composite table

Deltaproteobacteria

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 25.73 Ser AGA 0 TCT 8.76 Tyr ATA 0 TAT 16.07 Cys ACA 0 TGT 4.37 T
GAA 90 TTC 17.13 GGA 77 TCC 12.27 GTA 75 TAC 12.73 GCA 72 TGC 6.94 C
Leu TAA 77 TTA 10.73 TGA 76 TCA 7.05 ochre TTA 0 TAA 1.28 opal Sec TCA 40 TGA 1.27 A
CAA 70 TTG 16.50 CGA 71 TCG 10.75 amber CTA 0 TAG 0.69 Trp CCA 93 TGG 11.91 G
C Leu AAG 26 CTT 18.85 Pro AGG 0 CCT 8.84 His ATG 0 CAT 10.84 Arg ACG 80 CGT 7.65 T
GAG 54 CTC 23.88 GGG 83 CCC 15.34 GTG 78 CAC 10.05 GCG 0 CGC 19.04 C
TAG 87 CTA 4.04 TGG 87 CCA 6.32 Gln TTG 77 CAA 14.26 TCG 76 CGA 6.34 A
CAG 85 CTG 26.97 CGG 77 CCG 16.06 CTG 62 CAG 19.41 CCG 61 CGG 11.71 G
A Ile AAT 0 ATT 24.12 Thr AGT 0 ACT 6.76 Asn ATT 0 AAT 17.36 Ser ACT 0 AGT 6.46 T
GAT 40 ATC 29.01 GGT 71 ACC 22.14 GTT 39 AAC 15.99 GCT 67 AGC 13.44 C
TAT 0 ATA 9.85 TGT 80 ACA 9.61 Lys TTT 73 AAA 32.02 Arg TCT 76 AGA 7.34 A
Met CAT 213 ATG 23.00 CGT 75 ACG 12.28 CTT 55 AAG 23.48 CCT 77 AGG 7.53 G
G Val AAC 0 GTT 15.91 Ala AGC 0 GCT 12.93 Asp ATC 0 GAT 28.68 Gly ACC 0 GGT 13.58 T
GAC 90 GTC 22.30 GGC 81 GCC 37.42 GTC 92 GAC 25.59 GCC 81 GGC 29.62 C
TAC 87 GTA 8.06 TGC 46 GCA 13.62 Glu TTC 78 GAA 33.66 TCC 71 GGA 15.93 A
CAC 71 GTG 23.32 CGC 84 GCG 23.36 CTC 56 GAG 34.64 CCC 83 GGG 17.19 G



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