Composite table

Elusimicrobiota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 19.21 Ser AGA 0 TCT 7.44 Tyr ATA 0 TAT 14.79 Cys ACA 0 TGT 2.33 T
GAA 4 TTC 25.34 GGA 4 TCC 19.82 GTA 4 TAC 16.84 GCA 5 TGC 8.01 C
Leu TAA 4 TTA 9.99 TGA 4 TCA 6.94 ochre TTA 0 TAA 1.28 opal Sec TCA 0 TGA 1.16 A
CAA 4 TTG 10.29 CGA 6 TCG 11.14 amber CTA 0 TAG 0.61 Trp CCA 4 TGG 11.71 G
C Leu AAG 0 CTT 19.01 Pro AGG 0 CCT 7.39 His ATG 0 CAT 7.69 Arg ACG 3 CGT 4.16 T
GAG 4 CTC 19.31 GGG 4 CCC 15.95 GTG 4 CAC 8.91 GCG 1 CGC 23.57 C
TAG 4 CTA 2.94 TGG 4 CCA 3.22 Gln TTG 4 CAA 7.25 TCG 1 CGA 2.16 A
CAG 4 CTG 40.27 CGG 2 CCG 18.99 CTG 4 CAG 20.25 CCG 3 CGG 11.27 G
A Ile AAT 0 ATT 16.89 Thr AGT 0 ACT 6.81 Asn ATT 0 AAT 16.13 Ser ACT 0 AGT 4.00 T
GAT 4 ATC 23.08 GGT 4 ACC 22.13 GTT 4 AAC 20.60 GCT 4 AGC 14.07 C
TAT 0 ATA 20.43 TGT 4 ACA 7.13 Lys TTT 4 AAA 36.50 Arg TCT 4 AGA 6.57 A
Met CAT 12 ATG 22.20 CGT 4 ACG 13.14 CTT 4 AAG 28.72 CCT 4 AGG 8.71 G
G Val AAC 0 GTT 14.23 Ala AGC 0 GCT 12.24 Asp ATC 0 GAT 18.96 Gly ACC 0 GGT 9.06 T
GAC 4 GTC 18.56 GGC 4 GCC 47.14 GTC 4 GAC 29.50 GCC 4 GGC 40.94 C
TAC 4 GTA 9.59 TGC 4 GCA 8.86 Glu TTC 4 GAA 32.53 TCC 4 GGA 12.61 A
CAC 4 GTG 24.10 CGC 4 GCG 31.53 CTC 4 GAG 28.44 CCC 4 GGG 15.37 G



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