Composite table

Elusimicrobiota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 20.98 Ser AGA 0 TCT 8.45 Tyr ATA 0 TAT 15.93 Cys ACA 0 TGT 2.91 T
GAA 77 TTC 23.44 GGA 55 TCC 18.02 GTA 64 TAC 15.95 GCA 60 TGC 7.77 C
Leu TAA 65 TTA 11.59 TGA 64 TCA 7.96 ochre TTA 0 TAA 1.35 opal Sec TCA 1 TGA 1.16 A
CAA 58 TTG 11.06 CGA 61 TCG 10.93 amber CTA 0 TAG 0.64 Trp CCA 56 TGG 11.34 G
C Leu AAG 2 CTT 19.67 Pro AGG 0 CCT 8.07 His ATG 0 CAT 8.11 Arg ACG 37 CGT 4.19 T
GAG 61 CTC 18.28 GGG 70 CCC 14.62 GTG 60 CAC 8.43 GCG 33 CGC 21.58 C
TAG 67 CTA 3.22 TGG 57 CCA 3.57 Gln TTG 71 CAA 7.88 TCG 48 CGA 2.19 A
CAG 67 CTG 36.17 CGG 65 CCG 17.79 CTG 54 CAG 19.35 CCG 68 CGG 10.19 G
A Ile AAT 0 ATT 18.77 Thr AGT 0 ACT 7.69 Asn ATT 0 AAT 18.40 Ser ACT 0 AGT 4.83 T
GAT 24 ATC 21.97 GGT 64 ACC 20.01 GTT 49 AAC 19.80 GCT 59 AGC 13.53 C
TAT 0 ATA 22.59 TGT 66 ACA 8.52 Lys TTT 72 AAA 40.18 Arg TCT 57 AGA 8.45 A
Met CAT 175 ATG 22.33 CGT 67 ACG 12.79 CTT 67 AAG 28.21 CCT 65 AGG 8.55 G
G Val AAC 0 GTT 15.79 Ala AGC 0 GCT 13.35 Asp ATC 0 GAT 21.32 Gly ACC 0 GGT 10.11 T
GAC 60 GTC 17.81 GGC 62 GCC 42.53 GTC 55 GAC 27.96 GCC 68 GGC 38.04 C
TAC 63 GTA 10.74 TGC 24 GCA 10.77 Glu TTC 53 GAA 34.21 TCC 62 GGA 13.82 A
CAC 77 GTG 22.36 CGC 62 GCG 29.74 CTC 66 GAG 27.49 CCC 59 GGG 14.52 G



BACK