Composite table

Gemmatimonadota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 5.23 Ser AGA 0 TCT 1.87 Tyr ATA 0 TAT 4.94 Cys ACA 0 TGT 1.39 T
GAA 30 TTC 28.44 GGA 34 TCC 10.85 GTA 25 TAC 18.17 GCA 34 TGC 5.96 C
Leu TAA 28 TTA 0.81 TGA 24 TCA 2.41 ochre TTA 0 TAA 0.34 opal Sec TCA 26 TGA 1.93 A
CAA 30 TTG 7.40 CGA 29 TCG 18.88 amber CTA 0 TAG 0.72 Trp CCA 22 TGG 15.01 G
C Leu AAG 3 CTT 5.12 Pro AGG 0 CCT 3.14 His ATG 0 CAT 4.52 Arg ACG 39 CGT 7.07 T
GAG 28 CTC 40.47 GGG 15 CCC 19.62 GTG 22 CAC 15.81 GCG 0 CGC 42.17 C
TAG 30 CTA 1.60 TGG 31 CCA 3.21 Gln TTG 32 CAA 3.68 TCG 3 CGA 5.49 A
CAG 37 CTG 47.32 CGG 21 CCG 30.25 CTG 24 CAG 26.23 CCG 27 CGG 24.81 G
A Ile AAT 0 ATT 5.46 Thr AGT 0 ACT 2.61 Asn ATT 0 AAT 4.28 Ser ACT 0 AGT 3.01 T
GAT 30 ATC 33.63 GGT 27 ACC 23.70 GTT 64 AAC 17.43 GCT 20 AGC 14.85 C
TAT 2 ATA 1.44 TGT 30 ACA 2.97 Lys TTT 34 AAA 3.56 Arg TCT 25 AGA 1.56 A
Met CAT 88 ATG 18.63 CGT 22 ACG 26.44 CTT 43 AAG 18.11 CCT 36 AGG 3.27 G
G Val AAC 0 GTT 4.83 Ala AGC 0 GCT 6.54 Asp ATC 0 GAT 14.71 Gly ACC 0 GGT 9.80 T
GAC 25 GTC 31.06 GGC 27 GCC 50.46 GTC 41 GAC 41.30 GCC 38 GGC 46.28 C
TAC 39 GTA 3.70 TGC 27 GCA 7.87 Glu TTC 38 GAA 13.81 TCC 25 GGA 10.22 A
CAC 27 GTG 45.04 CGC 24 GCG 61.88 CTC 40 GAG 43.45 CCC 30 GGG 23.25 G



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