Composite table

Hydrogenophilia

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 9.97 Ser AGA 0 TCT 2.13 Tyr ATA 0 TAT 9.36 Cys ACA 0 TGT 2.06 T
GAA 1 TTC 25.56 GGA 1 TCC 10.37 GTA 1 TAC 14.50 GCA 1 TGC 7.31 C
Leu TAA 1 TTA 1.44 TGA 1 TCA 2.26 ochre TTA 0 TAA 0.77 opal Sec TCA 0 TGA 2.13 A
CAA 1 TTG 16.12 CGA 1 TCG 14.62 amber CTA 0 TAG 0.37 Trp CCA 1 TGG 15.33 G
C Leu AAG 0 CTT 7.37 Pro AGG 0 CCT 4.56 His ATG 0 CAT 8.93 Arg ACG 1 CGT 10.18 T
GAG 1 CTC 29.66 GGG 1 CCC 17.75 GTG 1 CAC 14.43 GCG 0 CGC 39.06 C
TAG 1 CTA 2.67 TGG 1 CCA 4.36 Gln TTG 1 CAA 10.54 TCG 0 CGA 3.56 A
CAG 1 CTG 53.32 CGG 1 CCG 26.25 CTG 0 CAG 26.52 CCG 1 CGG 15.70 G
A Ile AAT 0 ATT 8.43 Thr AGT 0 ACT 3.10 Asn ATT 0 AAT 7.53 Ser ACT 0 AGT 3.41 T
GAT 3 ATC 37.02 GGT 1 ACC 28.83 GTT 1 AAC 18.56 GCT 1 AGC 15.44 C
TAT 0 ATA 1.76 TGT 1 ACA 2.80 Lys TTT 1 AAA 12.81 Arg TCT 1 AGA 0.97 A
Met CAT 3 ATG 22.82 CGT 1 ACG 16.38 CTT 0 AAG 21.32 CCT 1 AGG 1.98 G
G Val AAC 0 GTT 7.07 Ala AGC 0 GCT 8.83 Asp ATC 0 GAT 18.72 Gly ACC 0 GGT 11.40 T
GAC 1 GTC 27.81 GGC 1 GCC 55.09 GTC 2 GAC 33.85 GCC 2 GGC 46.09 C
TAC 1 GTA 4.54 TGC 3 GCA 12.73 Glu TTC 2 GAA 30.90 TCC 1 GGA 6.15 A
CAC 1 GTG 34.80 CGC 1 GCG 46.42 CTC 0 GAG 29.11 CCC 1 GGG 14.18 G



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