Composite table

Metagenomic analysis of viruses in reclaimed water (SRP000673)


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT Ser AGA 0 TCT Tyr ATA 0 TAT Cys ACA 0 TGT T
GAA 11 TTC GGA 11 TCC GTA 22 TAC GCA 8 TGC C
Leu TAA 12 TTA TGA 9 TCA ochre TTA 1 TAA opal Sec TCA 7 TGA A
CAA 10 TTG CGA 1 TCG amber CTA 0 TAG Trp CCA 31 TGG G
C Leu AAG 0 CTT Pro AGG 0 CCT His ATG 0 CAT Arg ACG 23 CGT T
GAG 3 CTC GGG 2 CCC GTG 9 CAC GCG 1 CGC C
TAG 22 CTA TGG 27 CCA Gln TTG 29 CAA TCG 0 CGA A
CAG 3 CTG CGG 0 CCG CTG 5 CAG CCG 8 CGG G
A Ile AAT 0 ATT Thr AGT 0 ACT Asn ATT 0 AAT Ser ACT 0 AGT T
GAT 13 ATC GGT 4 ACC GTT 22 AAC GCT 22 AGC C
TAT 5 ATA TGT 36 ACA Lys TTT 37 AAA Arg TCT 36 AGA A
Met CAT 131 ATG CGT 0 ACG CTT 2 AAG CCT 5 AGG G
G Val AAC 1 GTT Ala AGC 0 GCT Asp ATC 0 GAT Gly ACC 0 GGT T
GAC 3 GTC GGC 2 GCC GTC 14 GAC GCC 24 GGC C
TAC 16 GTA TGC 21 GCA Glu TTC 19 GAA TCC 17 GGA A
CAC 1 GTG CGC 1 GCG CTC 1 GAG CCC 3 GGG G



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