Composite table

Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 1 TTT Ser AGA 4 TCT Tyr ATA 0 TAT Cys ACA 0 TGT T
GAA 160 TTC GGA 153 TCC GTA 184 TAC GCA 185 TGC C
Leu TAA 142 TTA TGA 155 TCA ochre TTA 1 TAA opal Sec TCA 13 TGA A
CAA 171 TTG CGA 73 TCG amber CTA 0 TAG Trp CCA 174 TGG G
C Leu AAG 34 CTT Pro AGG 1 CCT His ATG 0 CAT Arg ACG 128 CGT T
GAG 144 CTC GGG 117 CCC GTG 196 CAC GCG 31 CGC C
TAG 192 CTA TGG 214 CCA Gln TTG 180 CAA TCG 137 CGA A
CAG 52 CTG CGG 50 CCG CTG 45 CAG CCG 74 CGG G
A Ile AAT 4 ATT Thr AGT 4 ACT Asn ATT 0 AAT Ser ACT 0 AGT T
GAT 209 ATC GGT 180 ACC GTT 238 AAC GCT 164 AGC C
TAT 15 ATA TGT 198 ACA Lys TTT 224 AAA Arg TCT 196 AGA A
Met CAT 499 ATG CGT 83 ACG CTT 72 AAG CCT 118 AGG G
G Val AAC 0 GTT Ala AGC 2 GCT Asp ATC 0 GAT Gly ACC 0 GGT T
GAC 94 GTC GGC 146 GCC GTC 200 GAC GCC 187 GGC C
TAC 202 GTA TGC 214 GCA Glu TTC 187 GAA TCC 226 GGA A
CAC 36 GTG CGC 40 GCG CTC 59 GAG CCC 49 GGG G



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