Composite table

Minisyncoccota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 34.77 Ser AGA 0 TCT 12.58 Tyr ATA 0 TAT 17.07 Cys ACA 0 TGT 4.50 T
GAA 8 TTC 10.92 GGA 2 TCC 5.69 GTA 8 TAC 14.61 GCA 2 TGC 2.94 C
Leu TAA 6 TTA 14.63 TGA 6 TCA 14.11 ochre TTA 0 TAA 1.81 opal Sec TCA 0 TGA 0.81 A
CAA 6 TTG 21.27 CGA 2 TCG 9.53 amber CTA 0 TAG 0.96 Trp CCA 6 TGG 11.80 G
C Leu AAG 0 CTT 19.90 Pro AGG 0 CCT 7.57 His ATG 0 CAT 10.30 Arg ACG 0 CGT 9.03 T
GAG 7 CTC 21.45 GGG 4 CCC 7.23 GTG 6 CAC 10.42 GCG 4 CGC 12.65 C
TAG 8 CTA 9.34 TGG 6 CCA 16.64 Gln TTG 8 CAA 25.33 TCG 8 CGA 8.99 A
CAG 8 CTG 17.07 CGG 8 CCG 9.41 CTG 8 CAG 17.61 CCG 6 CGG 6.17 G
A Ile AAT 0 ATT 35.68 Thr AGT 0 ACT 16.16 Asn ATT 0 AAT 20.64 Ser ACT 4 AGT 13.88 T
GAT 4 ATC 20.23 GGT 8 ACC 18.03 GTT 2 AAC 15.36 GCT 4 AGC 9.81 C
TAT 4 ATA 10.84 TGT 8 ACA 18.56 Lys TTT 6 AAA 40.86 Arg TCT 6 AGA 7.87 A
Met CAT 2 ATG 20.05 CGT 6 ACG 12.50 CTT 8 AAG 17.96 CCT 8 AGG 2.76 G
G Val AAC 0 GTT 22.37 Ala AGC 0 GCT 19.95 Asp ATC 0 GAT 30.40 Gly ACC 0 GGT 22.00 T
GAC 6 GTC 14.80 GGC 4 GCC 18.01 GTC 6 GAC 18.72 GCC 8 GGC 16.85 C
TAC 8 GTA 15.76 TGC 4 GCA 25.09 Glu TTC 2 GAA 37.78 TCC 6 GGA 16.60 A
CAC 6 GTG 20.57 CGC 6 GCG 18.18 CTC 6 GAG 25.38 CCC 2 GGG 9.26 G



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