Composite table

Nitrososphaerota

Archaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 31.35 Ser AGA 0 TCT 18.97 Tyr ATA 0 TAT 20.12 Cys ACA 0 TGT 6.68 T
GAA 77 TTC 11.27 GGA 7 TCC 6.02 GTA 1 TAC 11.55 GCA 98 TGC 3.69 C
Leu TAA 7 TTA 22.23 TGA 94 TCA 23.05 ochre TTA 0 TAA 1.93 opal Sec TCA 0 TGA 1.04 A
CAA 11 TTG 15.64 CGA 39 TCG 5.06 amber CTA 0 TAG 1.17 Trp CCA 18 TGG 9.07 G
C Leu AAG 0 CTT 19.70 Pro AGG 0 CCT 11.74 His ATG 0 CAT 11.84 Arg ACG 0 CGT 4.14 T
GAG 88 CTC 7.15 GGG 75 CCC 3.76 GTG 89 CAC 6.47 GCG 78 CGC 3.25 C
TAG 84 CTA 13.66 TGG 94 CCA 17.99 Gln TTG 62 CAA 21.50 TCG 41 CGA 4.29 A
CAG 93 CTG 8.92 CGG 40 CCG 4.51 CTG 29 CAG 10.01 CCG 0 CGG 1.69 G
A Ile AAT 0 ATT 42.58 Thr AGT 0 ACT 18.38 Asn ATT 0 AAT 31.53 Ser ACT 0 AGT 11.30 T
GAT 82 ATC 17.41 GGT 84 ACC 7.95 GTT 104 AAC 16.97 GCT 97 AGC 7.47 C
TAT 3 ATA 25.56 TGT 98 ACA 23.57 Lys TTT 88 AAA 57.23 Arg TCT 5 AGA 19.54 A
Met CAT 142 ATG 25.00 CGT 95 ACG 5.22 CTT 79 AAG 23.69 CCT 4 AGG 6.85 G
G Val AAC 0 GTT 23.90 Ala AGC 0 GCT 14.64 Asp ATC 0 GAT 39.21 Gly ACC 1 GGT 18.66 T
GAC 72 GTC 10.07 GGC 90 GCC 9.19 GTC 59 GAC 17.66 GCC 83 GGC 13.35 C
TAC 76 GTA 22.32 TGC 55 GCA 33.72 Glu TTC 33 GAA 46.92 TCC 83 GGA 27.75 A
CAC 98 GTG 10.34 CGC 87 GCG 6.66 CTC 90 GAG 19.30 CCC 90 GGG 6.61 G



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