Composite table

Nitrospirota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 20.41 Ser AGA 0 TCT 7.91 Tyr ATA 0 TAT 16.35 Cys ACA 0 TGT 3.91 T
GAA 72 TTC 20.16 GGA 81 TCC 13.62 GTA 59 TAC 12.42 GCA 82 TGC 6.44 C
Leu TAA 68 TTA 7.52 TGA 65 TCA 8.87 ochre TTA 0 TAA 1.21 opal Sec TCA 33 TGA 1.46 A
CAA 72 TTG 13.98 CGA 71 TCG 11.51 amber CTA 0 TAG 0.82 Trp CCA 70 TGG 11.17 G
C Leu AAG 0 CTT 19.86 Pro AGG 0 CCT 9.38 His ATG 0 CAT 11.39 Arg ACG 67 CGT 6.78 T
GAG 73 CTC 25.09 GGG 86 CCC 12.75 GTG 65 CAC 9.48 GCG 0 CGC 14.18 C
TAG 78 CTA 3.43 TGG 66 CCA 5.82 Gln TTG 72 CAA 9.40 TCG 40 CGA 5.83 A
CAG 67 CTG 31.42 CGG 72 CCG 18.48 CTG 63 CAG 22.25 CCG 59 CGG 16.10 G
A Ile AAT 0 ATT 19.91 Thr AGT 0 ACT 6.47 Asn ATT 0 AAT 16.07 Ser ACT 0 AGT 5.91 T
GAT 47 ATC 30.33 GGT 60 ACC 18.23 GTT 71 AAC 16.21 GCT 69 AGC 12.45 C
TAT 0 ATA 15.80 TGT 62 ACA 11.64 Lys TTT 65 AAA 27.35 Arg TCT 68 AGA 9.04 A
Met CAT 216 ATG 24.22 CGT 71 ACG 16.19 CTT 61 AAG 29.12 CCT 70 AGG 10.53 G
G Val AAC 0 GTT 14.61 Ala AGC 0 GCT 11.86 Asp ATC 0 GAT 25.94 Gly ACC 0 GGT 12.06 T
GAC 82 GTC 24.18 GGC 71 GCC 31.62 GTC 68 GAC 26.06 GCC 77 GGC 27.73 C
TAC 78 GTA 9.22 TGC 47 GCA 16.92 Glu TTC 77 GAA 33.46 TCC 59 GGA 18.81 A
CAC 71 GTG 24.01 CGC 66 GCG 25.30 CTC 58 GAG 31.50 CCC 69 GGG 17.81 G



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