Composite table

Nudiviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 40.21 Ser AGA 0 TCT 13.58 Tyr ATA 0 TAT 43.96 Cys ACA 0 TGT 12.67 T
GAA 0 TTC 11.32 GGA 0 TCC 3.20 GTA 0 TAC 12.84 GCA 0 TGC 4.09 C
Leu TAA 0 TTA 48.50 TGA 0 TCA 26.80 ochre TTA 0 TAA 2.04 opal Sec TCA 0 TGA 0.43 A
CAA 0 TTG 15.89 CGA 0 TCG 5.74 amber CTA 0 TAG 0.67 Trp CCA 0 TGG 4.21 G
C Leu AAG 0 CTT 7.67 Pro AGG 0 CCT 7.81 His ATG 0 CAT 14.93 Arg ACG 0 CGT 4.52 T
GAG 0 CTC 2.19 GGG 0 CCC 1.95 GTG 0 CAC 3.56 GCG 0 CGC 1.20 C
TAG 0 CTA 11.06 TGG 0 CCA 19.16 Gln TTG 0 CAA 29.80 TCG 0 CGA 5.38 A
CAG 0 CTG 2.55 CGG 0 CCG 2.98 CTG 0 CAG 5.41 CCG 0 CGG 0.94 G
A Ile AAT 0 ATT 48.94 Thr AGT 0 ACT 21.30 Asn ATT 0 AAT 80.45 Ser ACT 0 AGT 16.85 T
GAT 0 ATC 10.24 GGT 0 ACC 5.82 GTT 0 AAC 22.98 GCT 0 AGC 4.59 C
TAT 0 ATA 50.00 TGT 0 ACA 26.78 Lys TTT 0 AAA 78.07 Arg TCT 0 AGA 12.28 A
Met CAT 0 ATG 20.98 CGT 0 ACG 4.93 CTT 0 AAG 11.18 CCT 0 AGG 2.55 G
G Val AAC 0 GTT 19.37 Ala AGC 0 GCT 10.77 Asp ATC 0 GAT 51.00 Gly ACC 0 GGT 11.42 T
GAC 0 GTC 2.69 GGC 0 GCC 1.51 GTC 0 GAC 9.52 GCC 0 GGC 1.63 C
TAC 1 GTA 18.34 TGC 0 GCA 10.50 Glu TTC 0 GAA 48.43 TCC 0 GGA 8.70 A
CAC 0 GTG 5.74 CGC 0 GCG 2.19 CTC 0 GAG 10.31 CCC 0 GGG 2.69 G



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