Composite table

Papillomaviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 43.29 Ser AGA 0 TCT 24.49 Tyr ATA 0 TAT 33.39 Cys ACA 0 TGT 14.13 T
GAA 0 TTC 5.79 GGA 0 TCC 18.48 GTA 0 TAC 7.79 GCA 0 TGC 7.57 C
Leu TAA 0 TTA 37.62 TGA 0 TCA 5.68 ochre TTA 0 TAA 0.78 opal Sec TCA 0 TGA 1.89 A
CAA 0 TTG 22.59 CGA 0 TCG 2.34 amber CTA 0 TAG 0.33 Trp CCA 0 TGG 12.35 G
C Leu AAG 0 CTT 8.79 Pro AGG 0 CCT 21.48 His ATG 0 CAT 15.36 Arg ACG 0 CGT 11.69 T
GAG 0 CTC 0.78 GGG 0 CCC 12.02 GTG 0 CAC 4.23 GCG 0 CGC 9.57 C
TAG 0 CTA 5.79 TGG 0 CCA 28.49 Gln TTG 0 CAA 17.25 TCG 0 CGA 2.11 A
CAG 0 CTG 5.01 CGG 0 CCG 9.24 CTG 0 CAG 28.38 CCG 0 CGG 6.34 G
A Ile AAT 0 ATT 23.04 Thr AGT 0 ACT 18.25 Asn ATT 0 AAT 31.94 Ser ACT 0 AGT 20.92 T
GAT 0 ATC 1.00 GGT 0 ACC 20.14 GTT 0 AAC 12.80 GCT 0 AGC 5.12 C
TAT 0 ATA 13.80 TGT 0 ACA 31.61 Lys TTT 0 AAA 28.05 Arg TCT 0 AGA 4.34 A
Met CAT 0 ATG 19.92 CGT 0 ACG 7.01 CTT 0 AAG 23.48 CCT 0 AGG 19.37 G
G Val AAC 0 GTT 21.04 Ala AGC 0 GCT 20.48 Asp ATC 0 GAT 38.95 Gly ACC 0 GGT 23.82 T
GAC 0 GTC 6.90 GGC 0 GCC 15.47 GTC 0 GAC 16.92 GCC 0 GGC 21.93 C
TAC 0 GTA 19.81 TGC 0 GCA 19.25 Glu TTC 0 GAA 21.15 TCC 0 GGA 12.02 A
CAC 0 GTG 19.25 CGC 0 GCG 2.56 CTC 0 GAG 22.26 CCC 0 GGG 12.35 G



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