Composite table

Planctomycetota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 1 TTT 14.48 Ser AGA 0 TCT 5.27 Tyr ATA 0 TAT 9.81 Cys ACA 2 TGT 3.80 T
GAA 188 TTC 23.08 GGA 124 TCC 10.84 GTA 201 TAC 15.66 GCA 237 TGC 7.50 C
Leu TAA 199 TTA 5.17 TGA 165 TCA 6.28 ochre TTA 2 TAA 0.85 opal Sec TCA 57 TGA 1.23 A
CAA 219 TTG 19.10 CGA 121 TCG 17.95 amber CTA 2 TAG 0.70 Trp CCA 253 TGG 14.77 G
C Leu AAG 11 CTT 10.84 Pro AGG 2 CCT 7.05 His ATG 5 CAT 8.41 Arg ACG 185 CGT 10.29 T
GAG 205 CTC 23.22 GGG 185 CCC 15.36 GTG 250 CAC 12.93 GCG 60 CGC 22.27 C
TAG 219 CTA 4.12 TGG 215 CCA 7.27 Gln TTG 233 CAA 15.42 TCG 233 CGA 10.40 A
CAG 235 CTG 34.92 CGG 185 CCG 22.86 CTG 193 CAG 22.50 CCG 145 CGG 15.43 G
A Ile AAT 3 ATT 16.05 Thr AGT 1 ACT 6.44 Asn ATT 5 AAT 12.60 Ser ACT 3 AGT 6.96 T
GAT 188 ATC 31.36 GGT 212 ACC 21.91 GTT 269 AAC 20.27 GCT 207 AGC 14.87 C
TAT 62 ATA 4.30 TGT 185 ACA 7.48 Lys TTT 232 AAA 18.41 Arg TCT 234 AGA 3.32 A
Met CAT 561 ATG 21.29 CGT 212 ACG 19.73 CTT 260 AAG 22.32 CCT 178 AGG 3.33 G
G Val AAC 0 GTT 13.75 Ala AGC 0 GCT 12.92 Asp ATC 5 GAT 25.33 Gly ACC 1 GGT 14.72 T
GAC 231 GTC 28.94 GGC 173 GCC 38.20 GTC 248 GAC 34.58 GCC 273 GGC 34.02 C
TAC 226 GTA 5.61 TGC 226 GCA 14.01 Glu TTC 255 GAA 33.39 TCC 225 GGA 13.89 A
CAC 176 GTG 23.80 CGC 142 GCG 32.49 CTC 151 GAG 28.47 CCC 150 GGG 15.46 G



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