Composite table

Planktonic microbial communities from Sargasso Sea, BATS Station (SRP001048)


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT Ser AGA 1 TCT Tyr ATA 0 TAT Cys ACA 0 TGT T
GAA 11 TTC GGA 9 TCC GTA 9 TAC GCA 8 TGC C
Leu TAA 7 TTA TGA 7 TCA ochre TTA 0 TAA opal Sec TCA 3 TGA A
CAA 6 TTG CGA 7 TCG amber CTA 0 TAG Trp CCA 4 TGG G
C Leu AAG 2 CTT Pro AGG 0 CCT His ATG 0 CAT Arg ACG 2 CGT T
GAG 8 CTC GGG 3 CCC GTG 8 CAC GCG 0 CGC C
TAG 6 CTA TGG 5 CCA Gln TTG 2 CAA TCG 8 CGA A
CAG 2 CTG CGG 6 CCG CTG 2 CAG CCG 2 CGG G
A Ile AAT 0 ATT Thr AGT 0 ACT Asn ATT 0 AAT Ser ACT 0 AGT T
GAT 14 ATC GGT 10 ACC GTT 9 AAC GCT 10 AGC C
TAT 0 ATA TGT 9 ACA Lys TTT 9 AAA Arg TCT 13 AGA A
Met CAT 33 ATG CGT 7 ACG CTT 7 AAG CCT 7 AGG G
G Val AAC 0 GTT Ala AGC 0 GCT Asp ATC 0 GAT Gly ACC 0 GGT T
GAC 8 GTC GGC 1 GCC GTC 3 GAC GCC 11 GGC C
TAC 6 GTA TGC 14 GCA Glu TTC 9 GAA TCC 11 GGA A
CAC 2 GTG CGC 2 GCG CTC 5 GAG CCC 5 GGG G



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