Composite table

Polydnaviridae


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 25.11 Ser AGA 0 TCT 19.94 Tyr ATA 0 TAT 22.05 Cys ACA 0 TGT 11.00 T
GAA 0 TTC 15.26 GGA 0 TCC 8.39 GTA 0 TAC 18.52 GCA 0 TGC 9.05 C
Leu TAA 0 TTA 18.59 TGA 0 TCA 20.17 ochre TTA 0 TAA 2.43 opal Sec TCA 0 TGA 1.02 A
CAA 0 TTG 17.68 CGA 0 TCG 11.78 amber CTA 0 TAG 1.31 Trp CCA 0 TGG 11.94 G
C Leu AAG 0 CTT 14.00 Pro AGG 0 CCT 12.74 His ATG 0 CAT 14.18 Arg ACG 0 CGT 9.13 T
GAG 0 CTC 8.04 GGG 0 CCC 5.63 GTG 0 CAC 9.24 GCG 0 CGC 4.87 C
TAG 0 CTA 10.87 TGG 0 CCA 15.37 Gln TTG 0 CAA 27.16 TCG 0 CGA 8.57 A
CAG 0 CTG 11.54 CGG 0 CCG 9.05 CTG 0 CAG 15.48 CCG 0 CGG 5.48 G
A Ile AAT 0 ATT 28.16 Thr AGT 0 ACT 21.37 Asn ATT 0 AAT 37.79 Ser ACT 0 AGT 16.74 T
GAT 0 ATC 18.24 GGT 0 ACC 10.83 GTT 0 AAC 27.66 GCT 0 AGC 10.81 C
TAT 0 ATA 20.18 TGT 0 ACA 17.24 Lys TTT 0 AAA 44.57 Arg TCT 0 AGA 16.17 A
Met CAT 0 ATG 22.05 CGT 0 ACG 11.39 CTT 0 AAG 28.15 CCT 0 AGG 6.59 G
G Val AAC 0 GTT 21.54 Ala AGC 0 GCT 16.41 Asp ATC 0 GAT 30.92 Gly ACC 0 GGT 12.30 T
GAC 0 GTC 12.65 GGC 0 GCC 7.43 GTC 0 GAC 20.55 GCC 0 GGC 7.18 C
TAC 0 GTA 13.72 TGC 0 GCA 15.83 Glu TTC 0 GAA 45.85 TCC 0 GGA 17.52 A
CAC 0 GTG 14.00 CGC 0 GCG 7.13 CTC 0 GAG 17.50 CCC 0 GGG 5.93 G



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