Composite table

Rhodothermota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 9.54 Ser AGA 0 TCT 2.76 Tyr ATA 0 TAT 5.46 Cys ACA 0 TGT 1.38 T
GAA 38 TTC 25.94 GGA 34 TCC 11.64 GTA 36 TAC 22.48 GCA 43 TGC 5.08 C
Leu TAA 21 TTA 0.74 TGA 36 TCA 1.80 ochre TTA 0 TAA 0.52 opal Sec TCA 0 TGA 1.41 A
CAA 37 TTG 5.77 CGA 36 TCG 17.46 amber CTA 0 TAG 0.91 Trp CCA 36 TGG 13.97 G
C Leu AAG 0 CTT 7.80 Pro AGG 0 CCT 3.90 His ATG 0 CAT 4.71 Arg ACG 19 CGT 7.58 T
GAG 37 CTC 40.12 GGG 36 CCC 21.11 GTG 37 CAC 16.86 GCG 17 CGC 38.15 C
TAG 36 CTA 2.01 TGG 35 CCA 3.10 Gln TTG 36 CAA 4.47 TCG 18 CGA 5.56 A
CAG 36 CTG 48.38 CGG 36 CCG 29.08 CTG 35 CAG 29.79 CCG 36 CGG 27.18 G
A Ile AAT 0 ATT 8.29 Thr AGT 0 ACT 1.88 Asn ATT 0 AAT 4.27 Ser ACT 0 AGT 2.76 T
GAT 37 ATC 30.34 GGT 36 ACC 23.90 GTT 44 AAC 19.12 GCT 36 AGC 14.15 C
TAT 0 ATA 0.91 TGT 36 ACA 3.06 Lys TTT 35 AAA 5.28 Arg TCT 25 AGA 0.87 A
Met CAT 113 ATG 18.07 CGT 37 ACG 29.61 CTT 33 AAG 15.23 CCT 37 AGG 1.52 G
G Val AAC 0 GTT 5.52 Ala AGC 0 GCT 6.73 Asp ATC 0 GAT 13.35 Gly ACC 0 GGT 6.48 T
GAC 36 GTC 33.06 GGC 36 GCC 59.63 GTC 40 GAC 48.89 GCC 37 GGC 45.41 C
TAC 35 GTA 4.37 TGC 37 GCA 7.40 Glu TTC 37 GAA 19.14 TCC 36 GGA 8.82 A
CAC 32 GTG 37.29 CGC 37 GCG 38.66 CTC 36 GAG 47.46 CCC 34 GGG 21.87 G



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