Composite table

Thermodesulfobacteriota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 19.36 Ser AGA 0 TCT 5.98 Tyr ATA 0 TAT 13.00 Cys ACA 0 TGT 4.02 T
GAA 438 TTC 21.76 GGA 420 TCC 16.65 GTA 436 TAC 14.83 GCA 405 TGC 9.14 C
Leu TAA 380 TTA 5.52 TGA 384 TCA 5.99 ochre TTA 0 TAA 1.06 opal Sec TCA 380 TGA 1.23 A
CAA 381 TTG 12.09 CGA 288 TCG 9.14 amber CTA 0 TAG 0.80 Trp CCA 428 TGG 11.20 G
C Leu AAG 0 CTT 17.70 Pro AGG 0 CCT 7.31 His ATG 0 CAT 9.86 Arg ACG 515 CGT 8.18 T
GAG 474 CTC 22.08 GGG 427 CCC 17.48 GTG 392 CAC 11.03 GCG 1 CGC 21.15 C
TAG 390 CTA 2.66 TGG 436 CCA 4.40 Gln TTG 408 CAA 8.87 TCG 172 CGA 4.20 A
CAG 466 CTG 43.70 CGG 364 CCG 17.17 CTG 418 CAG 24.69 CCG 373 CGG 15.17 G
A Ile AAT 0 ATT 18.34 Thr AGT 0 ACT 5.88 Asn ATT 0 AAT 13.60 Ser ACT 2 AGT 5.55 T
GAT 429 ATC 33.14 GGT 447 ACC 27.24 GTT 469 AAC 19.58 GCT 379 AGC 14.02 C
TAT 0 ATA 8.52 TGT 396 ACA 7.56 Lys TTT 448 AAA 23.72 Arg TCT 371 AGA 5.30 A
Met CAT 1385 ATG 25.60 CGT 367 ACG 10.94 CTT 348 AAG 26.15 CCT 382 AGG 6.90 G
G Val AAC 0 GTT 13.87 Ala AGC 0 GCT 12.10 Asp ATC 0 GAT 24.15 Gly ACC 0 GGT 13.18 T
GAC 398 GTC 21.92 GGC 476 GCC 47.52 GTC 597 GAC 29.59 GCC 693 GGC 34.69 C
TAC 460 GTA 7.50 TGC 413 GCA 13.48 Glu TTC 659 GAA 34.24 TCC 386 GGA 13.28 A
CAC 324 GTG 27.56 CGC 274 GCG 20.58 CTC 252 GAG 30.08 CCC 353 GGG 16.80 G



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