Composite table

Thermomicrobiota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 4.86 Ser AGA 0 TCT 1.94 Tyr ATA 0 TAT 6.23 Cys ACA 0 TGT 1.82 T
GAA 3 TTC 27.22 GGA 3 TCC 8.84 GTA 4 TAC 18.12 GCA 4 TGC 5.72 C
Leu TAA 3 TTA 1.24 TGA 3 TCA 2.81 ochre TTA 0 TAA 0.44 opal Sec TCA 1 TGA 1.84 A
CAA 3 TTG 10.38 CGA 3 TCG 13.80 amber CTA 0 TAG 0.95 Trp CCA 4 TGG 15.74 G
C Leu AAG 0 CTT 7.67 Pro AGG 0 CCT 4.36 His ATG 0 CAT 5.85 Arg ACG 0 CGT 10.13 T
GAG 3 CTC 45.08 GGG 3 CCC 14.64 GTG 3 CAC 14.89 GCG 3 CGC 35.48 C
TAG 3 CTA 2.62 TGG 3 CCA 7.62 Gln TTG 4 CAA 6.03 TCG 3 CGA 8.56 A
CAG 4 CTG 44.27 CGG 4 CCG 33.60 CTG 4 CAG 27.89 CCG 3 CGG 28.38 G
A Ile AAT 0 ATT 6.40 Thr AGT 0 ACT 3.92 Asn ATT 0 AAT 4.48 Ser ACT 0 AGT 4.11 T
GAT 3 ATC 41.28 GGT 3 ACC 24.33 GTT 4 AAC 15.27 GCT 4 AGC 15.32 C
TAT 0 ATA 1.12 TGT 3 ACA 4.68 Lys TTT 5 AAA 2.82 Arg TCT 3 AGA 1.06 A
Met CAT 12 ATG 17.43 CGT 5 ACG 21.31 CTT 4 AAG 14.41 CCT 3 AGG 2.12 G
G Val AAC 0 GTT 8.02 Ala AGC 0 GCT 12.87 Asp ATC 0 GAT 18.20 Gly ACC 0 GGT 14.15 T
GAC 4 GTC 40.92 GGC 3 GCC 44.69 GTC 4 GAC 33.50 GCC 3 GGC 36.35 C
TAC 3 GTA 4.29 TGC 3 GCA 13.65 Glu TTC 3 GAA 16.51 TCC 4 GGA 10.51 A
CAC 3 GTG 31.77 CGC 3 GCG 45.55 CTC 4 GAG 48.33 CCC 3 GGG 21.60 G



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