Composite table

Thermoplasmatota

Archaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 22.22 Ser AGA 0 TCT 10.55 Tyr ATA 0 TAT 24.76 Cys ACA 0 TGT 2.10 T
GAA 2 TTC 23.24 GGA 2 TCC 16.61 GTA 0 TAC 19.36 GCA 0 TGC 5.53 C
Leu TAA 2 TTA 11.75 TGA 2 TCA 20.42 ochre TTA 0 TAA 1.48 opal Sec TCA 0 TGA 1.59 A
CAA 1 TTG 7.37 CGA 1 TCG 6.62 amber CTA 0 TAG 0.41 Trp CCA 0 TGG 8.29 G
C Leu AAG 1 CTT 22.84 Pro AGG 0 CCT 8.50 His ATG 0 CAT 9.54 Arg ACG 0 CGT 3.02 T
GAG 1 CTC 14.58 GGG 0 CCC 8.55 GTG 2 CAC 6.71 GCG 2 CGC 4.10 C
TAG 2 CTA 5.43 TGG 0 CCA 11.04 Gln TTG 2 CAA 3.60 TCG 2 CGA 1.02 A
CAG 2 CTG 24.61 CGG 1 CCG 8.91 CTG 2 CAG 17.30 CCG 1 CGG 2.63 G
A Ile AAT 0 ATT 25.80 Thr AGT 0 ACT 8.82 Asn ATT 0 AAT 30.16 Ser ACT 0 AGT 7.24 T
GAT 3 ATC 19.74 GGT 1 ACC 14.28 GTT 2 AAC 20.56 GCT 2 AGC 12.38 C
TAT 0 ATA 44.39 TGT 2 ACA 21.08 Lys TTT 1 AAA 34.28 Arg TCT 0 AGA 13.28 A
Met CAT 6 ATG 30.56 CGT 1 ACG 7.16 CTT 1 AAG 29.18 CCT 2 AGG 23.23 G
G Val AAC 0 GTT 20.22 Ala AGC 0 GCT 11.50 Asp ATC 0 GAT 32.67 Gly ACC 0 GGT 14.70 T
GAC 1 GTC 14.65 GGC 2 GCC 18.72 GTC 2 GAC 23.43 GCC 2 GGC 18.91 C
TAC 2 GTA 16.13 TGC 2 GCA 26.03 Glu TTC 2 GAA 33.98 TCC 2 GGA 24.99 A
CAC 2 GTG 15.91 CGC 2 GCG 8.85 CTC 1 GAG 28.17 CCC 1 GGG 14.30 G



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