Composite table

Thermoproteota

Archaea


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 17.53 Ser AGA 0 TCT 11.12 Tyr ATA 0 TAT 20.82 Cys ACA 0 TGT 3.39 T
GAA 41 TTC 20.90 GGA 94 TCC 9.67 GTA 21 TAC 21.90 GCA 16 TGC 3.76 C
Leu TAA 69 TTA 23.50 TGA 86 TCA 12.14 ochre TTA 0 TAA 1.50 opal Sec TCA 0 TGA 1.17 A
CAA 81 TTG 14.22 CGA 6 TCG 7.30 amber CTA 0 TAG 1.10 Trp CCA 17 TGG 11.62 G
C Leu AAG 1 CTT 16.55 Pro AGG 0 CCT 11.30 His ATG 0 CAT 6.84 Arg ACG 0 CGT 2.73 T
GAG 98 CTC 17.97 GGG 1 CCC 11.20 GTG 100 CAC 7.69 GCG 112 CGC 3.83 C
TAG 57 CTA 18.44 TGG 79 CCA 13.28 Gln TTG 104 CAA 10.37 TCG 108 CGA 1.97 A
CAG 51 CTG 14.72 CGG 76 CCG 8.30 CTG 99 CAG 10.70 CCG 109 CGG 3.05 G
A Ile AAT 0 ATT 23.43 Thr AGT 1 ACT 13.69 Asn ATT 0 AAT 19.78 Ser ACT 0 AGT 10.89 T
GAT 73 ATC 14.27 GGT 93 ACC 10.83 GTT 57 AAC 18.22 GCT 84 AGC 12.24 C
TAT 0 ATA 40.02 TGT 10 ACA 13.11 Lys TTT 37 AAA 26.20 Arg TCT 38 AGA 19.11 A
Met CAT 134 ATG 21.38 CGT 12 ACG 9.58 CTT 32 AAG 35.68 CCT 32 AGG 26.89 G
G Val AAC 0 GTT 24.17 Ala AGC 0 GCT 19.73 Asp ATC 0 GAT 25.25 Gly ACC 0 GGT 18.05 T
GAC 95 GTC 15.64 GGC 100 GCC 20.92 GTC 101 GAC 20.94 GCC 98 GGC 19.20 C
TAC 97 GTA 21.89 TGC 94 GCA 17.71 Glu TTC 38 GAA 27.03 TCC 51 GGA 20.16 A
CAC 98 GTG 22.44 CGC 94 GCG 14.87 CTC 36 GAG 41.29 CCC 53 GGG 14.80 G



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