Composite table

Thermotogota

Bacteria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 29.99 Ser AGA 0 TCT 14.52 Tyr ATA 0 TAT 20.75 Cys ACA 0 TGT 4.24 T
GAA 109 TTC 22.02 GGA 108 TCC 8.25 GTA 109 TAC 18.14 GCA 108 TGC 2.67 C
Leu TAA 111 TTA 20.04 TGA 112 TCA 13.06 ochre TTA 0 TAA 1.18 opal Sec TCA 0 TGA 1.50 A
CAA 108 TTG 17.00 CGA 107 TCG 7.42 amber CTA 0 TAG 0.49 Trp CCA 109 TGG 9.64 G
C Leu AAG 0 CTT 24.23 Pro AGG 0 CCT 10.99 His ATG 0 CAT 8.05 Arg ACG 0 CGT 2.88 T
GAG 110 CTC 16.11 GGG 98 CCC 6.53 GTG 114 CAC 6.70 GCG 109 CGC 2.00 C
TAG 105 CTA 7.28 TGG 119 CCA 11.84 Gln TTG 109 CAA 11.78 TCG 112 CGA 2.86 A
CAG 111 CTG 14.26 CGG 104 CCG 6.77 CTG 113 CAG 10.73 CCG 106 CGG 1.53 G
A Ile AAT 0 ATT 28.53 Thr AGT 0 ACT 12.18 Asn ATT 0 AAT 25.55 Ser ACT 0 AGT 10.91 T
GAT 56 ATC 20.23 GGT 112 ACC 9.52 GTT 136 AAC 20.07 GCT 105 AGC 8.30 C
TAT 0 ATA 35.17 TGT 108 ACA 16.59 Lys TTT 110 AAA 50.66 Arg TCT 113 AGA 24.73 A
Met CAT 336 ATG 22.98 CGT 108 ACG 8.85 CTT 105 AAG 27.70 CCT 108 AGG 11.82 G
G Val AAC 0 GTT 28.73 Ala AGC 0 GCT 16.68 Asp ATC 0 GAT 34.86 Gly ACC 0 GGT 20.72 T
GAC 101 GTC 11.95 GGC 108 GCC 11.41 GTC 137 GAC 16.39 GCC 129 GGC 9.39 C
TAC 109 GTA 17.23 TGC 57 GCA 20.10 Glu TTC 109 GAA 55.41 TCC 112 GGA 27.75 A
CAC 99 GTG 16.97 CGC 102 GCG 10.10 CTC 98 GAG 24.30 CCC 114 GGG 8.80 G



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