Composite table

Varidnaviria


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage AA anti
codon		 tRNA codon usage
T phe AAA 0 TTT 32.98 Ser AGA 2 TCT 13.86 Tyr ATA 0 TAT 32.67 Cys ACA 0 TGT 12.82 T
GAA 3 TTC 13.41 GGA 1 TCC 8.17 GTA 6 TAC 14.75 GCA 1 TGC 5.98 C
Leu TAA 7 TTA 24.00 TGA 2 TCA 17.40 ochre TTA 0 TAA 2.32 opal Sec TCA 0 TGA 0.59 A
CAA 3 TTG 18.70 CGA 1 TCG 7.39 amber CTA 0 TAG 0.42 Trp CCA 2 TGG 9.91 G
C Leu AAG 1 CTT 15.25 Pro AGG 2 CCT 11.01 His ATG 0 CAT 13.78 Arg ACG 0 CGT 6.84 T
GAG 0 CTC 9.86 GGG 0 CCC 6.01 GTG 3 CAC 6.60 GCG 2 CGC 5.00 C
TAG 0 CTA 6.59 TGG 1 CCA 16.83 Gln TTG 8 CAA 25.40 TCG 2 CGA 4.28 A
CAG 2 CTG 6.74 CGG 0 CCG 5.75 CTG 4 CAG 7.48 CCG 0 CGG 2.23 G
A Ile AAT 0 ATT 42.92 Thr AGT 4 ACT 15.86 Asn ATT 0 AAT 54.12 Ser ACT 1 AGT 14.06 T
GAT 4 ATC 13.94 GGT 0 ACC 9.69 GTT 4 AAC 20.93 GCT 4 AGC 5.94 C
TAT 5 ATA 24.94 TGT 2 ACA 24.56 Lys TTT 4 AAA 65.02 Arg TCT 4 AGA 16.80 A
Met CAT 3 ATG 24.62 CGT 2 ACG 7.95 CTT 2 AAG 16.71 CCT 2 AGG 3.98 G
G Val AAC 1 GTT 23.34 Ala AGC 3 GCT 13.45 Asp ATC 0 GAT 43.27 Gly ACC 0 GGT 21.89 T
GAC 3 GTC 10.63 GGC 0 GCC 9.05 GTC 4 GAC 16.20 GCC 2 GGC 7.35 C
TAC 2 GTA 12.97 TGC 2 GCA 16.47 Glu TTC 6 GAA 45.74 TCC 2 GGA 17.27 A
CAC 2 GTG 10.70 CGC 2 GCG 7.54 CTC 1 GAG 12.97 CCC 0 GGG 4.10 G



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