Composite table

ssDNAviruses


[Important Notice]
This table can browse both anticodon number and codon usage concurrently.
When you consider the correlation of codon usage with anticodon number (i.e., number of tRNA genes having the respective anticodon), you have to pay attention to "wobble pairing" between the codon third position and the anticodon first position. For example, G base at the anticodon first position can pair with either U or C at the codon third position, and thus one anticodon can recognize two codons. U at the anticodon first position can pair with either A or G at the codon third position, and thus the anticodon also can recognize two codons. Furthermore, there exist the cases where the anticodon first position is enzymatically modified resulting in change of the codon recognition pattern.
Number of tRNA genes / Codon usage (permillage)
T C A G
AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage AA anti
codon
tRNA codon usage
T phe AAA 0 TTT 19.82 Ser AGA 0 TCT 15.19 Tyr ATA 0 TAT 17.83 Cys ACA 0 TGT 12.55 T
GAA 0 TTC 21.14 GGA 0 TCC 17.83 GTA 0 TAC 23.12 GCA 0 TGC 3.96 C
Leu TAA 0 TTA 3.96 TGA 0 TCA 18.49 ochre TTA 0 TAA 1.32 opal Sec TCA 0 TGA 0.66 A
CAA 0 TTG 10.57 CGA 0 TCG 5.94 amber CTA 0 TAG 0.66 Trp CCA 0 TGG 22.46 G
C Leu AAG 0 CTT 13.21 Pro AGG 0 CCT 30.38 His ATG 0 CAT 13.21 Arg ACG 0 CGT 5.28 T
GAG 0 CTC 19.82 GGG 0 CCC 9.91 GTG 0 CAC 12.55 GCG 0 CGC 3.96 C
TAG 0 CTA 7.93 TGG 0 CCA 25.76 Gln TTG 0 CAA 20.48 TCG 0 CGA 5.28 A
CAG 0 CTG 16.51 CGG 0 CCG 8.59 CTG 0 CAG 27.08 CCG 0 CGG 5.28 G
A Ile AAT 0 ATT 23.78 Thr AGT 0 ACT 15.19 Asn ATT 0 AAT 24.44 Ser ACT 0 AGT 14.53 T
GAT 0 ATC 20.48 GGT 0 ACC 15.19 GTT 0 AAC 34.35 GCT 0 AGC 11.23 C
TAT 0 ATA 9.25 TGT 0 ACA 21.14 Lys TTT 0 AAA 23.12 Arg TCT 0 AGA 17.83 A
Met CAT 0 ATG 18.49 CGT 0 ACG 8.59 CTT 0 AAG 29.72 CCT 0 AGG 10.57 G
G Val AAC 0 GTT 19.82 Ala AGC 0 GCT 20.48 Asp ATC 0 GAT 30.38 Gly ACC 0 GGT 13.21 T
GAC 0 GTC 8.59 GGC 0 GCC 16.51 GTC 0 GAC 22.46 GCC 0 GGC 14.53 C
TAC 0 GTA 12.55 TGC 0 GCA 20.48 Glu TTC 0 GAA 29.06 TCC 0 GGA 24.44 A
CAC 0 GTG 8.59 CGC 0 GCG 3.96 CTC 0 GAG 23.12 CCC 0 GGG 13.21 G



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