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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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tRNA gene List
Calditrichota
HIT:
124 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>C171072782
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
662691
662618
-
Ala
CGC
-
¡û
>C171072742
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1051444
1051517
+
Ala
TGC
-
¡û
>C171072776
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2384659
2384586
-
Ala
GGC
-
¡û
>W121008699
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1349264
1349191
-
Ala
CGC
[ENA]
¡û
>W121008672
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1736120
1736193
+
Ala
TGC
[ENA]
¡û
>W121008693
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3062410
3062337
-
Ala
GGC
[ENA]
¡û
>W1711395071
MESS01000128
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
37881
37806
-
Ala
GGC
[ENA]
¡û
>C171072779
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1192101
1192027
-
Arg
ACG
-
¡û
>C171072774
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2879267
2879192
-
Arg
CCT
-
¡û
>C171072767
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3277230
3277154
-
Arg
CCG
-
¡û
>C171072756
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552366
4552440
+
Arg
TCT
-
¡û
>W121008701
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
677897
677823
-
Arg
TCT
[ENA]
¡û
>W121008696
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1876777
1876703
-
Arg
ACG
[ENA]
¡û
>W121008691
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3554340
3554265
-
Arg
CCT
[ENA]
¡û
>W121008684
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3950607
3950531
-
Arg
CCG
[ENA]
¡û
>W1711395061
MESS01000073
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
15381
15307
-
Arg
ACG
[ENA]
¡û
>W1711395076
MESS01000137
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
15741
15665
-
Arg
TCG
[ENA]
¡û
>W1711395056
MESS01000030
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
18905
18979
+
Arg
CCG
[ENA]
¡û
>C171072740
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
547673
547748
+
Asn
GTT
-
¡û
>W121008670
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1235325
1235400
+
Asn
GTT
[ENA]
¡û
>W1711395059
MESS01000049
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
99129
99201
+
Asn
GTT
[ENA]
¡û
>C171072760
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4813545
4813468
-
Asp
GTC
-
¡û
>W121008666
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
419935
420012
+
Asp
GTC
[ENA]
¡û
>W1711395079
MESS01000148
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
20155
20231
+
Asp
GTC
[ENA]
¡û
>C171072772
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3009795
3009720
-
Cys
GCA
-
¡û
>W121008689
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3684867
3684792
-
Cys
GCA
[ENA]
¡û
>W1711395072
MESS01000128
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
37651
37576
-
Cys
GCA
[ENA]
¡û
>C171072778
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1192187
1192114
-
Gln
CTG
-
¡û
>C171072749
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1434458
1434532
+
Gln
TTG
-
¡û
>W121008695
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1876863
1876790
-
Gln
CTG
[ENA]
¡û
>W121008679
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
2118813
2118887
+
Gln
TTG
[ENA]
¡û
>W1711395077
MESS01000145
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
27230
27304
+
Gln
TTG
[ENA]
¡û
>C171072780
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1191991
1191918
-
Glu
CTC
-
¡û
>C171072758
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552574
4552649
+
Glu
TTC
-
¡û
>W121008703
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
677689
677614
-
Glu
TTC
[ENA]
¡û
>W121008697
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1876667
1876594
-
Glu
CTC
[ENA]
¡û
>C171072744
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058788
1058864
+
Gly
TCC
-
¡û
>C171072748
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1393945
1394018
+
Gly
CCC
-
¡û
>C171072771
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3009900
3009827
-
Gly
GCC
-
¡û
>W121008674
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1743464
1743540
+
Gly
TCC
[ENA]
¡û
>W121008678
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
2078300
2078373
+
Gly
CCC
[ENA]
¡û
>W121008688
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3684972
3684899
-
Gly
GCC
[ENA]
¡û
>W1711395053
MESS01000010
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
7519
7444
-
Gly
GCC
[ENA]
¡û
>W1711395055
MESS01000014
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
11077
11004
-
Gly
CCC
[ENA]
¡û
>W1711395065
MESS01000087
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
11284
11357
+
Gly
TCC
[ENA]
¡û
>C171072757
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552449
4552524
+
His
GTG
-
¡û
>W121008702
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
677814
677739
-
His
GTG
[ENA]
¡û
>W1711395069
MESS01000102
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
19016
19090
+
His
GTG
[ENA]
¡û
>C171072741
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1051207
1051283
+
Ile
GAT
-
¡û
>W121008671
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1735883
1735959
+
Ile
GAT
[ENA]
¡û
>C171072739
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
284232
284316
+
Leu
CAG
-
¡û
>C171072781
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
662905
662821
-
Leu
CAA
-
¡û
>C171072777
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1265501
1265417
-
Leu
TAG
-
¡û
>C171072750
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2212918
2213003
+
Leu
GAG
-
¡û
>C171072773
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3008906
3008818
-
Leu
TAA
-
¡û
>W121008669
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
972653
972737
+
Leu
CAG
[ENA]
¡û
>W121008698
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1349478
1349394
-
Leu
CAA
[ENA]
¡û
>W121008694
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1949856
1949772
-
Leu
TAG
[ENA]
¡û
>W121008680
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
2893295
2893380
+
Leu
GAG
[ENA]
¡û
>W121008690
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3683978
3683890
-
Leu
TAA
[ENA]
¡û
>W1711395054
MESS01000010
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
7399
7312
-
Leu
TAA
[ENA]
¡û
>W1711395075
MESS01000137
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
18923
18837
-
Leu
TAG
[ENA]
¡û
>W1711395062
MESS01000084
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
71357
71271
-
Leu
CAG
[ENA]
¡û
>C171072751
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2303506
2303581
+
Lys
TTT
-
¡û
>C171072752
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2426108
2426181
+
Lys
CTT
-
¡û
>W121008681
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
2983607
2983682
+
Lys
TTT
[ENA]
¡û
>W121008682
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3103859
3103932
+
Lys
CTT
[ENA]
¡û
>W1711395070
MESS01000119
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
390
317
-
Lys
CTT
[ENA]
¡û
>W1711395078
MESS01000145
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
30240
30315
+
Lys
TTT
[ENA]
¡û
>C171072770
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3108615
3108539
-
Met
CAT
-
¡û
>C171072762
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4436791
4436718
-
Met
CAT
-
¡û
>C171072761
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4436905
4436829
-
Met
CAT
-
¡û
>W121008667
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
792973
793049
+
Met
CAT
[ENA]
¡û
>W121008668
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
793087
793160
+
Met
CAT
[ENA]
¡û
>W121008687
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3783687
3783611
-
Met
CAT
[ENA]
¡û
>W1711395058
MESS01000030
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
6316
6242
-
Met
CAT
[ENA]
¡û
>W1711395057
MESS01000030
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
6436
6360
-
Met
CAT
[ENA]
¡û
>W1711395052
MESS01000002
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
15300
15224
-
Met
CAT
[ENA]
¡û
>C171072783
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
76038
75963
-
Phe
GAA
-
¡û
>W121008665
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
179286
179361
+
Phe
GAA
[ENA]
¡û
>W1711395080
MESS01000148
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
16744
16669
-
Phe
GAA
[ENA]
¡û
>C171072753
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2582355
2582429
+
Pro
CGG
-
¡û
>C171072775
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
2587798
2587722
-
Pro
GGG
-
¡û
>C171072755
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4552285
4552359
+
Pro
TGG
-
¡û
>W121008700
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
677978
677904
-
Pro
TGG
[ENA]
¡û
>W121008683
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3256980
3257054
+
Pro
CGG
[ENA]
¡û
>W121008692
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3262423
3262347
-
Pro
GGG
[ENA]
¡û
>W1711395068
MESS01000102
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
18708
18785
+
Pro
TGG
[ENA]
¡û
>C172000110
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3171150
3171058
-
SeC
TCA
-
¡û
>W1720002800
MESS01000080
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
5786
5882
+
SeC
TCA
[ENA]
¡û
>C171072766
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3698751
3698663
-
Ser
CGA
-
¡û
>C171072765
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3699759
3699674
-
Ser
GGA
-
¡û
>C171072764
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4124178
4124087
-
Ser
GCT
-
¡û
>C171072763
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4172665
4172582
-
Ser
TGA
-
¡û
>W121008664
AGCQ01000001
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
394718
394630
-
Ser
CGA
[ENA]
¡û
>W121008663
AGCQ01000001
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
395726
395641
-
Ser
GGA
[ENA]
¡û
>W121008662
AGCQ01000001
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
817611
817520
-
Ser
GCT
[ENA]
¡û
>W121008661
AGCQ01000001
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
866097
866014
-
Ser
TGA
[ENA]
¡û
>W1711395060
MESS01000070
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
24821
24912
+
Ser
GGA
[ENA]
¡û
>W1711395073
MESS01000137
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
26100
26194
+
Ser
GCT
[ENA]
¡û
>W1711395074
MESS01000137
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
26292
26378
+
Ser
TGA
[ENA]
¡û
>C171072743
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058655
1058728
+
Thr
TGT
-
¡û
>C171072745
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1058887
1058962
+
Thr
GGT
-
¡û
>C171072754
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3806249
3806322
+
Thr
CGT
-
¡û
>W121008660
AGCQ01000001
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
501526
501599
+
Thr
CGT
[ENA]
¡û
>W121008673
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1743331
1743404
+
Thr
TGT
[ENA]
¡û
>W121008675
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1743563
1743638
+
Thr
GGT
[ENA]
¡û
>W1730026967
MESS01000033
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
2037
2112
+
Thr
CGT
[ENA]
¡û
>W1711395063
MESS01000087
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
11059
11132
+
Thr
TGT
[ENA]
¡û
>W1711395066
MESS01000087
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
11394
11467
+
Thr
GGT
[ENA]
¡û
>C171072746
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1060378
1060452
+
Trp
CCA
-
¡û
>W121008676
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1745054
1745128
+
Trp
CCA
[ENA]
¡û
>W1711395067
MESS01000087
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
12935
13009
+
Trp
CCA
[ENA]
¡û
>C171072768
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3170585
3170501
-
Tyr
GTA
-
¡û
>W121008685
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3845655
3845571
-
Tyr
GTA
[ENA]
¡û
>W1711395064
MESS01000087
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
11140
11223
+
Tyr
GTA
[ENA]
¡û
>C171072747
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
1222185
1222259
+
Val
CAC
-
¡û
>C171072769
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
3170397
3170321
-
Val
GAC
-
¡û
>C171072759
CP018099
Calditrichota
Caldithrix abyssi DSM 13497 LF13 [CP018099]
4823036
4823111
+
Val
TAC
-
¡û
>W121008704
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
410444
410369
-
Val
TAC
[ENA]
¡û
>W121008677
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
1906543
1906617
+
Val
CAC
[ENA]
¡û
>W121008686
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3845467
3845391
-
Val
GAC
[ENA]
¡û
>W1711395081
MESS01000153
Calditrichota
Caldithrix sp. RBG_13_44_9 [MESS]
356
280
-
Val
CAC
[ENA]
¡û
>W122000021
AGCQ01000003
Calditrichota
Caldithrix abyssi DSM 13497 [AGCQ]
3846220
3846128
-
seC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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