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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
Unclassified : Thermoplasmatales archaeon SG8-52-3 [LSSG]
HIT:
19 sequence(s).
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb"
(1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006"
.
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008"
.
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
>W1610920077
LSSG01000061
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
13
89
+
Lys
TTT
[ENA]
--
¡û
>W1610920072
LSSG01000030
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
22
95
+
Gly
CCC
[ENA]
--
¡û
>W1610920081
LSSG01000084
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
70
142
+
Val
TAC
[ENA]
--
¡û
>W1610920064
LSSG01000003
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
323
396
+
Gln
TTG
[ENA]
--
¡û
>W1610920070
LSSG01000024
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
647
718
+
Cys
GCA
[ENA]
--
¡û
>W1610920075
LSSG01000040
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
769
685
-
Ser
GCT
[ENA]
--
¡û
>W1610920065
LSSG01000006
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
2430
2504
+
Glu
TTC
[ENA]
--
¡û
>W1610920079
LSSG01000077
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
2885
2812
-
Met
CAT
[ENA]
--
¡û
>W1610920066
LSSG01000007
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
5357
5429
+
Val
GAC
[ENA]
--
¡û
>W1610920067
LSSG01000007
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
7550
7637
+
Ser
TGA
[ENA]
--
¡û
>W1610920073
LSSG01000037
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
10189
10114
-
Arg
CCG
[ENA]
--
¡û
>W1610920068
LSSG01000014
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
11713
11639
-
Gly
GCC
[ENA]
--
¡û
>W1610920078
LSSG01000074
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
12320
12392
+
Pro
CGG
[ENA]
--
¡û
>W1610920071
LSSG01000028
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
17739
17810
+
Ala
CGC
[ENA]
--
¡û
>W1610920076
LSSG01000053
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
21475
21401
-
Pro
GGG
[ENA]
--
¡û
>W1610920080
LSSG01000079
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
25522
25599
+
Pro
TGG
[ENA]
--
¡û
>W1610920069
LSSG01000018
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
32532
32456
-
Arg
TCT
[ENA]
--
¡û
>W1610920074
LSSG01000038
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
33333
33259
-
Lys
CTT
[ENA]
--
¡û
>W1610920082
LSSG01000084
Unclassified
Thermoplasmatales archaeon SG8-52-3 [LSSG]
43147
43075
-
Phe
GAA
[ENA]
--
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
SPLITSdb
Decision
Download Sequence
View ClustalW result
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