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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[FSWR] metagenome; soil
HIT:
43 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180017268
FSWR01000035
[FSWR] metagenome; soil
174
99
-
Ala
CGC
[ENA]
¢þ
>WENV180017279
FSWR01000052
[FSWR] metagenome; soil
861
785
-
Ala
GGC
[ENA]
¢þ
>WENV180017272
FSWR01000043
[FSWR] metagenome; soil
4433
4507
+
Gln
CTG
[ENA]
¢þ
>WENV180017304
FSWR01000084
[FSWR] metagenome; soil
4524
4449
-
Pro
GGG
[ENA]
¢þ
>WENV180017264
FSWR01000030
[FSWR] metagenome; soil
7084
6995
-
Ser
GCT
[ENA]
¢þ
>WENV180017294
FSWR01000065
[FSWR] metagenome; soil
7353
7426
+
Glu
CTC
[ENA]
¢þ
>WENV180017301
FSWR01000075
[FSWR] metagenome; soil
7420
7493
+
Arg
ACG
[ENA]
¢þ
>WENV180017263
FSWR01000028
[FSWR] metagenome; soil
7508
7435
-
Glu
CTC
[ENA]
¢þ
>WENV180017305
FSWR01000086
[FSWR] metagenome; soil
7804
7729
-
Ala
CGC
[ENA]
¢þ
>WENV180017302
FSWR01000077
[FSWR] metagenome; soil
10810
10892
+
Leu
TAG
[ENA]
¢þ
>WENV180017292
FSWR01000062
[FSWR] metagenome; soil
14303
14214
-
Ser
CGA
[ENA]
¢þ
>WENV180017282
FSWR01000053
[FSWR] metagenome; soil
21623
21537
-
Leu
CAG
[ENA]
¢þ
>WENV180017273
FSWR01000048
[FSWR] metagenome; soil
32358
32433
+
Lys
CTT
[ENA]
¢þ
>WENV180017281
FSWR01000053
[FSWR] metagenome; soil
36496
36423
-
Ala
TGC
[ENA]
¢þ
>WENV180017280
FSWR01000053
[FSWR] metagenome; soil
36600
36526
-
Ile
GAT
[ENA]
¢þ
>WENV180017290
FSWR01000062
[FSWR] metagenome; soil
38176
38249
+
Glu
TTC
[ENA]
¢þ
>WENV180017291
FSWR01000062
[FSWR] metagenome; soil
38262
38336
+
Asp
GTC
[ENA]
¢þ
>WENV180017288
FSWR01000057
[FSWR] metagenome; soil
41145
41070
-
Thr
CGT
[ENA]
¢þ
>WENV180017267
FSWR01000035
[FSWR] metagenome; soil
41275
41203
-
Arg
CCT
[ENA]
¢þ
>WENV180017293
FSWR01000064
[FSWR] metagenome; soil
43916
43842
-
Leu
TAA
[ENA]
¢þ
>WENV180017303
FSWR01000077
[FSWR] metagenome; soil
47402
47326
-
fMet
CAT
[ENA]
¢þ
>WENV180017274
FSWR01000051
[FSWR] metagenome; soil
48862
48935
+
Gly
CCC
[ENA]
¢þ
>WENV180017278
FSWR01000052
[FSWR] metagenome; soil
55217
55143
-
Pro
TGG
[ENA]
¢þ
>WENV180017275
FSWR01000052
[FSWR] metagenome; soil
55382
55454
+
Gly
TCC
[ENA]
¢þ
>WENV180017283
FSWR01000057
[FSWR] metagenome; soil
64456
64532
+
Pro
CGG
[ENA]
¢þ
>WENV180017284
FSWR01000057
[FSWR] metagenome; soil
77165
77250
+
Ser
GGA
[ENA]
¢þ
>WENV180017300
FSWR01000068
[FSWR] metagenome; soil
116179
116106
-
Val
CAC
[ENA]
¢þ
>WENV180017295
FSWR01000068
[FSWR] metagenome; soil
116283
116355
+
Gly
GCC
[ENA]
¢þ
>WENV180017296
FSWR01000068
[FSWR] metagenome; soil
116394
116465
+
Cys
GCA
[ENA]
¢þ
>WENV180017297
FSWR01000068
[FSWR] metagenome; soil
116505
116577
+
Val
GAC
[ENA]
¢þ
>WENV180017266
FSWR01000032
[FSWR] metagenome; soil
117989
117915
-
Lys
TTT
[ENA]
¢þ
>WENV180017277
FSWR01000052
[FSWR] metagenome; soil
122572
122499
-
Arg
TCT
[ENA]
¢þ
>WENV180017276
FSWR01000052
[FSWR] metagenome; soil
133129
133204
+
His
GTG
[ENA]
¢þ
>WENV180017287
FSWR01000057
[FSWR] metagenome; soil
137774
137701
-
Trp
CCA
[ENA]
¢þ
>WENV180017265
FSWR01000032
[FSWR] metagenome; soil
146915
146841
-
Thr
TGT
[ENA]
¢þ
>WENV180017286
FSWR01000057
[FSWR] metagenome; soil
150367
150292
-
Met
CAT
[ENA]
¢þ
>WENV180017269
FSWR01000042
[FSWR] metagenome; soil
152976
153049
+
Asn
GTT
[ENA]
¢þ
>WENV180017270
FSWR01000042
[FSWR] metagenome; soil
159406
159481
+
Ile2
CAT
[ENA]
¢þ
>WENV180017285
FSWR01000057
[FSWR] metagenome; soil
160556
160473
-
Tyr
GTA
[ENA]
¢þ
>WENV180017271
FSWR01000042
[FSWR] metagenome; soil
181049
181122
+
Val
TAC
[ENA]
¢þ
>WENV180017298
FSWR01000068
[FSWR] metagenome; soil
187772
187854
+
Leu
CAA
[ENA]
¢þ
>WENV180017289
FSWR01000061
[FSWR] metagenome; soil
197267
197340
+
Arg
CCG
[ENA]
¢þ
>WENV180017299
FSWR01000068
[FSWR] metagenome; soil
337198
337113
-
Leu
GAG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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