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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OCNO] soil metagenome; Clay
HIT:
65 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV180584051
OCNO01007842
[OCNO] soil metagenome; Clay
11
86
+
Val
TAC
[ENA]
¡û
>WENV180584084
OCNO01022479
[OCNO] soil metagenome; Clay
23
98
+
Arg
GCG
[ENA]
¡û
>WENV180584086
OCNO01022738
[OCNO] soil metagenome; Clay
25
103
+
Asp
GTC
[ENA]
¡û
>WENV180584070
OCNO01015986
[OCNO] soil metagenome; Clay
29
102
+
Arg
ACG
[ENA]
¡û
>WENV180584077
OCNO01020924
[OCNO] soil metagenome; Clay
39
125
+
Tyr
GTA
[ENA]
¡û
>WENV180584059
OCNO01010666
[OCNO] soil metagenome; Clay
56
130
+
Gly
TCC
[ENA]
¡û
>WENV180584097
OCNO01028264
[OCNO] soil metagenome; Clay
67
140
+
Cys
GCA
[ENA]
¡û
>WENV180584085
OCNO01022575
[OCNO] soil metagenome; Clay
78
2
-
Ile
GAT
[ENA]
¡û
>WENV180584083
OCNO01022116
[OCNO] soil metagenome; Clay
78
152
+
Ile
GAT
[ENA]
¡û
>WENV180584040
OCNO01000420
[OCNO] soil metagenome; Clay
80
4
-
Pro
CGG
[ENA]
¡û
>WENV180584104
OCNO01031505
[OCNO] soil metagenome; Clay
83
10
-
Glu
TTC
[ENA]
¡û
>WENV180584042
OCNO01001160
[OCNO] soil metagenome; Clay
84
7
-
Ile
GAT
[ENA]
¡û
>WENV180584062
OCNO01012582
[OCNO] soil metagenome; Clay
85
158
+
Gln
CTG
[ENA]
¡û
>WENV180584071
OCNO01016390
[OCNO] soil metagenome; Clay
87
177
+
Ser
TGA
[ENA]
¡û
>WENV180584096
OCNO01028244
[OCNO] soil metagenome; Clay
89
14
-
Gly
GCC
[ENA]
¡û
>WENV180584065
OCNO01013304
[OCNO] soil metagenome; Clay
91
15
-
Ala
TGC
[ENA]
¡û
>WENV180584079
OCNO01021094
[OCNO] soil metagenome; Clay
92
4
-
Leu
TAA
[ENA]
¡û
>WENV180584063
OCNO01012726
[OCNO] soil metagenome; Clay
93
167
+
Asp
GTC
[ENA]
¡û
>WENV180584052
OCNO01007842
[OCNO] soil metagenome; Clay
94
170
+
Asp
GTC
[ENA]
¡û
>WENV180584076
OCNO01020121
[OCNO] soil metagenome; Clay
95
172
+
Ile
GAT
[ENA]
¡û
>WENV180584087
OCNO01023353
[OCNO] soil metagenome; Clay
100
24
-
Pro
TGG
[ENA]
¡û
>WENV180584046
OCNO01006007
[OCNO] soil metagenome; Clay
113
29
-
Leu
TAG
[ENA]
¡û
>WENV180584073
OCNO01016828
[OCNO] soil metagenome; Clay
115
190
+
Met
CAT
[ENA]
¡û
>WENV180584102
OCNO01030559
[OCNO] soil metagenome; Clay
116
42
-
Arg
TCT
[ENA]
¡û
>WENV180584050
OCNO01007498
[OCNO] soil metagenome; Clay
121
196
+
Val
TAC
[ENA]
¡û
>WENV180584069
OCNO01015436
[OCNO] soil metagenome; Clay
122
46
-
Arg
TCG
[ENA]
¡û
>WENV180584060
OCNO01012186
[OCNO] soil metagenome; Clay
122
198
+
Ile
GAT
[ENA]
¡û
>WENV180584075
OCNO01019738
[OCNO] soil metagenome; Clay
127
38
-
Ser
TGA
[ENA]
¡û
>WENV180584078
OCNO01020924
[OCNO] soil metagenome; Clay
129
204
+
Gly
TCC
[ENA]
¡û
>WENV180584103
OCNO01030843
[OCNO] soil metagenome; Clay
130
56
-
Cys
GCA
[ENA]
¡û
>WENV180584099
OCNO01029685
[OCNO] soil metagenome; Clay
135
211
+
Pro
CGG
[ENA]
¡û
>WENV180584045
OCNO01003741
[OCNO] soil metagenome; Clay
139
64
-
Thr
TGT
[ENA]
¡û
>WENV180584091
OCNO01023610
[OCNO] soil metagenome; Clay
143
57
-
Leu
CAA
[ENA]
¡û
>WENV180584074
OCNO01019084
[OCNO] soil metagenome; Clay
144
216
+
Cys
GCA
[ENA]
¡û
>WENV180584067
OCNO01014343
[OCNO] soil metagenome; Clay
152
78
-
Arg
TCT
[ENA]
¡û
>WENV180584048
OCNO01006753
[OCNO] soil metagenome; Clay
154
78
-
Pro
GGG
[ENA]
¡û
>WENV180584098
OCNO01028574
[OCNO] soil metagenome; Clay
154
238
+
Ser
CGA
[ENA]
¡û
>WENV180584053
OCNO01008015
[OCNO] soil metagenome; Clay
166
92
-
Phe
GAA
[ENA]
¡û
>WENV180584055
OCNO01008306
[OCNO] soil metagenome; Clay
166
93
-
Gly
GCC
[ENA]
¡û
>WENV180584101
OCNO01030388
[OCNO] soil metagenome; Clay
168
95
-
Gly
CCC
[ENA]
¡û
>WENV180584057
OCNO01009201
[OCNO] soil metagenome; Clay
174
100
-
Gln
TTG
[ENA]
¡û
>WENV180584064
OCNO01012983
[OCNO] soil metagenome; Clay
178
252
+
Glu
CTC
[ENA]
¡û
>WENV180584092
OCNO01025397
[OCNO] soil metagenome; Clay
179
253
+
Ala
CGC
[ENA]
¡û
>WENV180584056
OCNO01008364
[OCNO] soil metagenome; Clay
180
107
-
Val
CAC
[ENA]
¡û
>WENV180584095
OCNO01027749
[OCNO] soil metagenome; Clay
189
102
-
Ser
GGA
[ENA]
¡û
>WENV180584068
OCNO01014533
[OCNO] soil metagenome; Clay
195
109
-
Leu
CAA
[ENA]
¡û
>WENV180584072
OCNO01016455
[OCNO] soil metagenome; Clay
201
126
-
His
GTG
[ENA]
¡û
>WENV180584061
OCNO01012186
[OCNO] soil metagenome; Clay
204
279
+
Ala
TGC
[ENA]
¡û
>WENV180584044
OCNO01001404
[OCNO] soil metagenome; Clay
209
135
-
Gln
CTG
[ENA]
¡û
>WENV180584081
OCNO01021536
[OCNO] soil metagenome; Clay
211
123
-
Leu
GAG
[ENA]
¡û
>WENV180584041
OCNO01000741
[OCNO] soil metagenome; Clay
214
140
-
Lys
CTT
[ENA]
¡û
>WENV180584089
OCNO01023405
[OCNO] soil metagenome; Clay
223
150
-
Val
CAC
[ENA]
¡û
>WENV180584080
OCNO01021277
[OCNO] soil metagenome; Clay
225
151
-
Gln
TTG
[ENA]
¡û
>WENV180584088
OCNO01023368
[OCNO] soil metagenome; Clay
232
157
-
Asn
GTT
[ENA]
¡û
>WENV180584054
OCNO01008244
[OCNO] soil metagenome; Clay
261
166
-
SeC
TCA
[ENA]
¡û
>WENV180584047
OCNO01006098
[OCNO] soil metagenome; Clay
262
349
+
Leu
CAA
[ENA]
¡û
>WENV180584043
OCNO01001172
[OCNO] soil metagenome; Clay
344
272
-
Glu
CTC
[ENA]
¡û
>WENV180584058
OCNO01009843
[OCNO] soil metagenome; Clay
390
317
-
Ala
GGC
[ENA]
¡û
>WENV180584090
OCNO01023549
[OCNO] soil metagenome; Clay
420
493
+
Val
TAC
[ENA]
¡û
>WENV180584066
OCNO01014222
[OCNO] soil metagenome; Clay
439
514
+
Val
TAC
[ENA]
¡û
>WENV180584094
OCNO01026147
[OCNO] soil metagenome; Clay
440
357
-
Ser
GCT
[ENA]
¡û
>WENV180584082
OCNO01022022
[OCNO] soil metagenome; Clay
472
544
+
Cys
GCA
[ENA]
¡û
>WENV180584100
OCNO01029811
[OCNO] soil metagenome; Clay
533
461
-
Val
CAC
[ENA]
¡û
>WENV180584093
OCNO01025587
[OCNO] soil metagenome; Clay
546
471
-
Arg
CCT
[ENA]
¡û
>WENV180584049
OCNO01007165
[OCNO] soil metagenome; Clay
706
779
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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