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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA gene List
[OIAU] human gut metagenome; feces
HIT:
37 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV182346862
OIAU01000600
[OIAU] human gut metagenome; feces
81
154
+
Gly
CCC
[ENA]
¡û
>WENV182346884
OIAU01002529
[OIAU] human gut metagenome; feces
82
8
-
Val
TAC
[ENA]
¡û
>WENV182346873
OIAU01001379
[OIAU] human gut metagenome; feces
84
159
+
Thr
CGT
[ENA]
¡û
>WENV182346885
OIAU01002596
[OIAU] human gut metagenome; feces
112
188
+
Pro
TGG
[ENA]
¡û
>WENV182346869
OIAU01001146
[OIAU] human gut metagenome; feces
118
192
+
Ile
GAT
[ENA]
¡û
>WENV182346858
OIAU01000566
[OIAU] human gut metagenome; feces
132
62
-
Gly
TCC
[ENA]
¡û
>WENV182346874
OIAU01001379
[OIAU] human gut metagenome; feces
182
255
+
Gly
GCC
[ENA]
¡û
>WENV182346871
OIAU01001148
[OIAU] human gut metagenome; feces
187
262
+
Asn
GTT
[ENA]
¡û
>WENV182346857
OIAU01000566
[OIAU] human gut metagenome; feces
221
148
-
Phe
GAA
[ENA]
¡û
>WENV182346870
OIAU01001146
[OIAU] human gut metagenome; feces
226
300
+
Ala
TGC
[ENA]
¡û
>WENV182346877
OIAU01001382
[OIAU] human gut metagenome; feces
253
180
-
Val
CAC
[ENA]
¡û
>WENV182346856
OIAU01000547
[OIAU] human gut metagenome; feces
280
206
-
Gln
TTG
[ENA]
¡û
>WENV182346867
OIAU01001106
[OIAU] human gut metagenome; feces
285
357
+
Glu
TTC
[ENA]
¡û
>WENV182346849
OIAU01000078
[OIAU] human gut metagenome; feces
289
213
-
Ala
CGC
[ENA]
¡û
>WENV182346875
OIAU01001379
[OIAU] human gut metagenome; feces
302
391
+
Leu
GAG
[ENA]
¡û
>WENV182346879
OIAU01001666
[OIAU] human gut metagenome; feces
328
401
+
Lys
TTT
[ENA]
¡û
>WENV182346864
OIAU01000725
[OIAU] human gut metagenome; feces
344
419
+
Trp
CCA
[ENA]
¡û
>WENV182346876
OIAU01001382
[OIAU] human gut metagenome; feces
370
298
-
Val
CAC
[ENA]
¡û
>WENV182346868
OIAU01001106
[OIAU] human gut metagenome; feces
382
458
+
Asp
GTC
[ENA]
¡û
>WENV182346883
OIAU01002421
[OIAU] human gut metagenome; feces
384
301
-
Leu
TAG
[ENA]
¡û
>WENV182346882
OIAU01002408
[OIAU] human gut metagenome; feces
385
312
-
Arg
CCT
[ENA]
¡û
>WENV182346861
OIAU01000595
[OIAU] human gut metagenome; feces
386
296
-
Ser
GCT
[ENA]
¡û
>WENV182346865
OIAU01000857
[OIAU] human gut metagenome; feces
392
465
+
Gln
CTG
[ENA]
¡û
>WENV182346855
OIAU01000547
[OIAU] human gut metagenome; feces
403
327
-
His
GTG
[ENA]
¡û
>WENV182346881
OIAU01002188
[OIAU] human gut metagenome; feces
428
504
+
Glu
TTC
[ENA]
¡û
>WENV182346878
OIAU01001384
[OIAU] human gut metagenome; feces
466
377
-
Ser
GCT
[ENA]
¡û
>WENV182346854
OIAU01000547
[OIAU] human gut metagenome; feces
483
410
-
Arg
TCT
[ENA]
¡û
>WENV182346866
OIAU01000857
[OIAU] human gut metagenome; feces
483
559
+
Glu
CTC
[ENA]
¡û
>WENV182346880
OIAU01001688
[OIAU] human gut metagenome; feces
498
415
-
Leu
TAG
[ENA]
¡û
>WENV182346872
OIAU01001279
[OIAU] human gut metagenome; feces
503
577
+
Gly
CCC
[ENA]
¡û
>WENV182346852
OIAU01000377
[OIAU] human gut metagenome; feces
505
429
-
fMet
CAT
[ENA]
¡û
>WENV182346860
OIAU01000595
[OIAU] human gut metagenome; feces
543
455
-
Ser
TGA
[ENA]
¡û
>WENV182346853
OIAU01000430
[OIAU] human gut metagenome; feces
603
529
-
Gln
TTG
[ENA]
¡û
>WENV182346863
OIAU01000668
[OIAU] human gut metagenome; feces
678
764
+
Leu
TAA
[ENA]
¡û
>WENV182346851
OIAU01000376
[OIAU] human gut metagenome; feces
695
769
+
Ile
GAT
[ENA]
¡û
>WENV182346859
OIAU01000575
[OIAU] human gut metagenome; feces
710
635
-
Thr
TGT
[ENA]
¡û
>WENV182346850
OIAU01000081
[OIAU] human gut metagenome; feces
1151
1227
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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