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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA gene List
[OLTG] human gut metagenome; faeces
HIT:
25 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183307421
OLTG01001905
[OLTG] human gut metagenome; faeces
85
171
+
Leu
CAG
[ENA]
¡û
>WENV183307404
OLTG01000170
[OLTG] human gut metagenome; faeces
112
41
-
Gln
TTG
[ENA]
¡û
>WENV183307425
OLTG01002066
[OLTG] human gut metagenome; faeces
145
220
+
Gly
GCC
[ENA]
¡û
>WENV183307418
OLTG01001116
[OLTG] human gut metagenome; faeces
182
92
-
Ser
GCT
[ENA]
¡û
>WENV183307422
OLTG01001905
[OLTG] human gut metagenome; faeces
214
290
+
Pro
TGG
[ENA]
¡û
>WENV183307403
OLTG01000130
[OLTG] human gut metagenome; faeces
259
183
-
Asp
GTC
[ENA]
¡û
>WENV183307424
OLTG01001927
[OLTG] human gut metagenome; faeces
271
187
-
Tyr
GTA
[ENA]
¡û
>WENV183307405
OLTG01000341
[OLTG] human gut metagenome; faeces
277
362
+
Ser
GCT
[ENA]
¡û
>WENV183307415
OLTG01000763
[OLTG] human gut metagenome; faeces
285
211
-
Asn
GTT
[ENA]
¡û
>WENV183307416
OLTG01000943
[OLTG] human gut metagenome; faeces
311
387
+
Pro
GGG
[ENA]
¡û
>WENV183307423
OLTG01001927
[OLTG] human gut metagenome; faeces
357
282
-
Thr
TGT
[ENA]
¡û
>WENV183307406
OLTG01000341
[OLTG] human gut metagenome; faeces
369
443
+
Arg
ACG
[ENA]
¡û
>WENV183307419
OLTG01001218
[OLTG] human gut metagenome; faeces
370
294
-
Val
TAC
[ENA]
¡û
>WENV183307417
OLTG01001064
[OLTG] human gut metagenome; faeces
437
524
+
Ser
GGA
[ENA]
¡û
>WENV183307420
OLTG01001273
[OLTG] human gut metagenome; faeces
442
516
+
Lys
TTT
[ENA]
¡û
>WENV183307407
OLTG01000341
[OLTG] human gut metagenome; faeces
448
521
+
Phe
GAA
[ENA]
¡û
>WENV183307408
OLTG01000341
[OLTG] human gut metagenome; faeces
531
605
+
His
GTG
[ENA]
¡û
>WENV183307414
OLTG01000572
[OLTG] human gut metagenome; faeces
564
489
-
Ile
GAT
[ENA]
¡û
>WENV183307412
OLTG01000406
[OLTG] human gut metagenome; faeces
591
517
-
Val
GAC
[ENA]
¡û
>WENV183307413
OLTG01000572
[OLTG] human gut metagenome; faeces
659
586
-
Ala
TGC
[ENA]
¡û
>WENV183307411
OLTG01000406
[OLTG] human gut metagenome; faeces
670
595
-
Gly
GCC
[ENA]
¡û
>WENV183307410
OLTG01000394
[OLTG] human gut metagenome; faeces
772
698
-
Ala
TGC
[ENA]
¡û
>WENV183307409
OLTG01000394
[OLTG] human gut metagenome; faeces
863
789
-
Ile
GAT
[ENA]
¡û
>WENV183307402
OLTG01000055
[OLTG] human gut metagenome; faeces
2186
2111
-
Ala
TGC
[ENA]
¡û
>WENV183307401
OLTG01000055
[OLTG] human gut metagenome; faeces
2299
2223
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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