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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA gene List
[OLVL] human gut metagenome; faeces
HIT:
36 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV183309973
OLVL01001904
[OLVL] human gut metagenome; faeces
5
81
+
Pro
TGG
[ENA]
¡û
>WENV183309974
OLVL01001904
[OLVL] human gut metagenome; faeces
89
164
+
Ala
TGC
[ENA]
¡û
>WENV183309970
OLVL01001744
[OLVL] human gut metagenome; faeces
106
180
+
Phe
GAA
[ENA]
¡û
>WENV183309968
OLVL01001364
[OLVL] human gut metagenome; faeces
137
213
+
fMet
CAT
[ENA]
¡û
>WENV183309981
OLVL01002447
[OLVL] human gut metagenome; faeces
139
66
-
Asn
GTT
[ENA]
¡û
>WENV183309975
OLVL01001904
[OLVL] human gut metagenome; faeces
185
261
+
Met
CAT
[ENA]
¡û
>WENV183309948
OLVL01000045
[OLVL] human gut metagenome; faeces
216
142
-
Val
TAC
[ENA]
¡û
>WENV183309980
OLVL01002447
[OLVL] human gut metagenome; faeces
239
166
-
Asn
GTT
[ENA]
¡û
>WENV183309979
OLVL01002131
[OLVL] human gut metagenome; faeces
243
317
+
Pro
CGG
[ENA]
¡û
>WENV183309963
OLVL01000618
[OLVL] human gut metagenome; faeces
246
319
+
Ala
TGC
[ENA]
¡û
>WENV183309978
OLVL01002078
[OLVL] human gut metagenome; faeces
250
165
-
Ser
TGA
[ENA]
¡û
>WENV183309969
OLVL01001419
[OLVL] human gut metagenome; faeces
262
187
-
Pro
TGG
[ENA]
¡û
>WENV183309976
OLVL01001904
[OLVL] human gut metagenome; faeces
289
365
+
Ile2
CAT
[ENA]
¡û
>WENV183309947
OLVL01000045
[OLVL] human gut metagenome; faeces
299
224
-
Asp
GTC
[ENA]
¡û
>WENV183309964
OLVL01000618
[OLVL] human gut metagenome; faeces
342
416
+
Ile
GAT
[ENA]
¡û
>WENV183309972
OLVL01001856
[OLVL] human gut metagenome; faeces
377
303
-
Arg
CCG
[ENA]
¡û
>WENV183309971
OLVL01001804
[OLVL] human gut metagenome; faeces
379
455
+
Glu
TTC
[ENA]
¡û
>WENV183309966
OLVL01001131
[OLVL] human gut metagenome; faeces
384
459
+
Thr
CGT
[ENA]
¡û
>WENV183309961
OLVL01000565
[OLVL] human gut metagenome; faeces
392
479
+
Ser
GGA
[ENA]
¡û
>WENV183309952
OLVL01000150
[OLVL] human gut metagenome; faeces
452
523
+
Gln
TTG
[ENA]
¡û
>WENV183309977
OLVL01001904
[OLVL] human gut metagenome; faeces
457
534
+
Asp
GTC
[ENA]
¡û
>WENV183309965
OLVL01000822
[OLVL] human gut metagenome; faeces
485
558
+
Gly
TCC
[ENA]
¡û
>WENV183309956
OLVL01000245
[OLVL] human gut metagenome; faeces
488
413
-
Trp
CCA
[ENA]
¡û
>WENV183309962
OLVL01000581
[OLVL] human gut metagenome; faeces
551
624
+
Gly
CCC
[ENA]
¡û
>WENV183309967
OLVL01001131
[OLVL] human gut metagenome; faeces
551
632
+
Leu
TAG
[ENA]
¡û
>WENV183309954
OLVL01000229
[OLVL] human gut metagenome; faeces
636
708
+
Val
GAC
[ENA]
¡û
>WENV183309959
OLVL01000411
[OLVL] human gut metagenome; faeces
679
605
-
Met
CAT
[ENA]
¡û
>WENV183309955
OLVL01000229
[OLVL] human gut metagenome; faeces
753
826
+
Val
CAC
[ENA]
¡û
>WENV183309960
OLVL01000425
[OLVL] human gut metagenome; faeces
771
697
-
His
GTG
[ENA]
¡û
>WENV183309950
OLVL01000060
[OLVL] human gut metagenome; faeces
829
755
-
Gln
CTG
[ENA]
¡û
>WENV183309958
OLVL01000411
[OLVL] human gut metagenome; faeces
839
757
-
Tyr
GTA
[ENA]
¡û
>WENV183309957
OLVL01000368
[OLVL] human gut metagenome; faeces
849
922
+
Lys
TTT
[ENA]
¡û
>WENV183309949
OLVL01000060
[OLVL] human gut metagenome; faeces
940
867
-
Glu
CTC
[ENA]
¡û
>WENV183309946
OLVL01000011
[OLVL] human gut metagenome; faeces
1076
1165
+
Ser
GCT
[ENA]
¡û
>WENV183309953
OLVL01000178
[OLVL] human gut metagenome; faeces
1249
1174
-
Arg
CCT
[ENA]
¡û
>WENV183309951
OLVL01000098
[OLVL] human gut metagenome; faeces
1604
1530
-
Ile
TAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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