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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[AFAP] human metagenome; nasopharyngeal aspirates
HIT:
15 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170000498
AFAP01003161
[AFAP] human metagenome; nasopharyngeal aspirates
4
93
+
Ser
ACT
[ENA]
¢þ
>WENV170000504
AFAP01004404
[AFAP] human metagenome; nasopharyngeal aspirates
22
95
+
Asn
GTT
[ENA]
¢þ
>WENV170000497
AFAP01003112
[AFAP] human metagenome; nasopharyngeal aspirates
29
115
+
Leu
CAA
[ENA]
¢þ
>WENV170000500
AFAP01003368
[AFAP] human metagenome; nasopharyngeal aspirates
64
140
+
Val
TAC
[ENA]
¢þ
>WENV170000493
AFAP01001140
[AFAP] human metagenome; nasopharyngeal aspirates
82
9
-
Trp
CCA
[ENA]
¢þ
>WENV170000494
AFAP01001368
[AFAP] human metagenome; nasopharyngeal aspirates
98
181
+
Leu
CAG
[ENA]
¢þ
>WENV170000499
AFAP01003269
[AFAP] human metagenome; nasopharyngeal aspirates
102
8
-
SeC
TCA
[ENA]
¢þ
>WENV170000491
AFAP01000778
[AFAP] human metagenome; nasopharyngeal aspirates
117
192
+
Ala
TGC
[ENA]
¢þ
>WENV170000503
AFAP01004246
[AFAP] human metagenome; nasopharyngeal aspirates
118
44
-
Phe
GAA
[ENA]
¢þ
>WENV170000495
AFAP01001812
[AFAP] human metagenome; nasopharyngeal aspirates
125
201
+
Arg
CCG
[ENA]
¢þ
>WENV170000496
AFAP01001852
[AFAP] human metagenome; nasopharyngeal aspirates
137
61
-
Arg
TCT
[ENA]
¢þ
>WENV170000490
AFAP01000609
[AFAP] human metagenome; nasopharyngeal aspirates
179
104
-
Phe
GAA
[ENA]
¢þ
>WENV170000501
AFAP01003410
[AFAP] human metagenome; nasopharyngeal aspirates
179
108
-
Val
CAC
[ENA]
¢þ
>WENV170000502
AFAP01004246
[AFAP] human metagenome; nasopharyngeal aspirates
215
143
-
Met
CAT
[ENA]
¢þ
>WENV170000492
AFAP01000780
[AFAP] human metagenome; nasopharyngeal aspirates
263
187
-
Asp
GTC
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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