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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[AGCH] permafrost metagenome; Alaskan permafrost
HIT:
27 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170001302
AGCH01000043
[AGCH] permafrost metagenome; Alaskan permafrost
76
3
-
Pro
CGG
[ENA]
¢þ
>WENV170001308
AGCH01000082
[AGCH] permafrost metagenome; Alaskan permafrost
139
64
-
Arg
CCT
[ENA]
¢þ
>WENV170001309
AGCH01000094
[AGCH] permafrost metagenome; Alaskan permafrost
165
238
+
Val
CAC
[ENA]
¢þ
>WENV170001298
AGCH01000008
[AGCH] permafrost metagenome; Alaskan permafrost
179
253
+
Met
CAT
[ENA]
¢þ
>WENV170001316
AGCH01000100
[AGCH] permafrost metagenome; Alaskan permafrost
225
152
-
Phe
GAA
[ENA]
¢þ
>WENV170001307
AGCH01000082
[AGCH] permafrost metagenome; Alaskan permafrost
256
182
-
Pro
TGG
[ENA]
¢þ
>WENV170001315
AGCH01000100
[AGCH] permafrost metagenome; Alaskan permafrost
314
240
-
Tyr
GTA
[ENA]
¢þ
>WENV170001318
AGCH01000167
[AGCH] permafrost metagenome; Alaskan permafrost
594
668
+
Pro
TGG
[ENA]
¢þ
>WENV170001319
AGCH01000167
[AGCH] permafrost metagenome; Alaskan permafrost
711
786
+
Arg
CCT
[ENA]
¢þ
>WENV170001323
AGCH01000343
[AGCH] permafrost metagenome; Alaskan permafrost
936
1021
+
Leu
CAA
[ENA]
¢þ
>WENV170001301
AGCH01000043
[AGCH] permafrost metagenome; Alaskan permafrost
1622
1538
-
Leu
GAG
[ENA]
¢þ
>WENV170001324
AGCH01000495
[AGCH] permafrost metagenome; Alaskan permafrost
1638
1566
-
Arg
GCG
[ENA]
¢þ
>WENV170001320
AGCH01000254
[AGCH] permafrost metagenome; Alaskan permafrost
1718
1793
+
Gln
CTG
[ENA]
¢þ
>WENV170001317
AGCH01000110
[AGCH] permafrost metagenome; Alaskan permafrost
2455
2383
-
Gln
CTG
[ENA]
¢þ
>WENV170001314
AGCH01000099
[AGCH] permafrost metagenome; Alaskan permafrost
4300
4228
-
Ala
GGC
[ENA]
¢þ
>WENV170001321
AGCH01000289
[AGCH] permafrost metagenome; Alaskan permafrost
4333
4259
-
Met
CAT
[ENA]
¢þ
>WENV170001311
AGCH01000096
[AGCH] permafrost metagenome; Alaskan permafrost
4398
4326
-
Ala
GGC
[ENA]
¢þ
>WENV170001313
AGCH01000099
[AGCH] permafrost metagenome; Alaskan permafrost
5824
5737
-
Leu
CAG
[ENA]
¢þ
>WENV170001322
AGCH01000301
[AGCH] permafrost metagenome; Alaskan permafrost
5915
5986
+
Gly
CCC
[ENA]
¢þ
>WENV170001310
AGCH01000096
[AGCH] permafrost metagenome; Alaskan permafrost
5916
5832
-
Leu
CAG
[ENA]
¢þ
>WENV170001303
AGCH01000059
[AGCH] permafrost metagenome; Alaskan permafrost
8174
8249
+
Arg
TCT
[ENA]
¢þ
>WENV170001304
AGCH01000075
[AGCH] permafrost metagenome; Alaskan permafrost
8356
8431
+
Asn
GTT
[ENA]
¢þ
>WENV170001305
AGCH01000075
[AGCH] permafrost metagenome; Alaskan permafrost
8435
8512
+
Met
CAT
[ENA]
¢þ
>WENV170001306
AGCH01000079
[AGCH] permafrost metagenome; Alaskan permafrost
8587
8510
-
Arg
TCT
[ENA]
¢þ
>WENV170001312
AGCH01000099
[AGCH] permafrost metagenome; Alaskan permafrost
11576
11501
-
Gly
GCC
[ENA]
¢þ
>WENV170001300
AGCH01000028
[AGCH] permafrost metagenome; Alaskan permafrost
12299
12375
+
Pro
GGG
[ENA]
¢þ
>WENV170001299
AGCH01000011
[AGCH] permafrost metagenome; Alaskan permafrost
20814
20740
-
Pro
GGG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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