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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[AKYZ] insect gut metagenome;
HIT:
24 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170005127
AKYZ01002348
[AKYZ] insect gut metagenome;
5
75
+
Cys
GCA
[ENA]
¢þ
>WENV170005128
AKYZ01002381
[AKYZ] insect gut metagenome;
17
92
+
Asn
GTT
[ENA]
¢þ
>WENV170005118
AKYZ01000281
[AKYZ] insect gut metagenome;
73
-1
-
Arg
TCT
[ENA]
¢þ
>WENV170005129
AKYZ01002381
[AKYZ] insect gut metagenome;
99
175
+
Pro
TGG
[ENA]
¢þ
>WENV170005117
AKYZ01000112
[AKYZ] insect gut metagenome;
151
76
-
Asn
GTT
[ENA]
¢þ
>WENV170005130
AKYZ01002381
[AKYZ] insect gut metagenome;
182
255
+
Gln
TTG
[ENA]
¢þ
>WENV170005134
AKYZ01002759
[AKYZ] insect gut metagenome;
226
151
-
His
GTG
[ENA]
¢þ
>WENV170005133
AKYZ01002745
[AKYZ] insect gut metagenome;
239
168
-
Glu
TTC
[ENA]
¢þ
>WENV170005131
AKYZ01002381
[AKYZ] insect gut metagenome;
263
336
+
Trp
CCA
[ENA]
¢þ
>WENV170005137
AKYZ01005326
[AKYZ] insect gut metagenome;
444
538
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170005120
AKYZ01000877
[AKYZ] insect gut metagenome;
467
543
+
Ile
GAT
[ENA]
¢þ
>WENV170005121
AKYZ01000877
[AKYZ] insect gut metagenome;
568
643
+
Ala
TGC
[ENA]
¢þ
>WENV170005132
AKYZ01002381
[AKYZ] insect gut metagenome;
584
658
+
Phe
GAA
[ENA]
¢þ
>WENV170005125
AKYZ01001866
[AKYZ] insect gut metagenome;
639
563
-
Pro
GGG
[ENA]
¢þ
>WENV170005122
AKYZ01000877
[AKYZ] insect gut metagenome;
678
754
+
Met
CAT
[ENA]
¢þ
>WENV170005123
AKYZ01000877
[AKYZ] insect gut metagenome;
790
866
+
Met
CAT
[ENA]
¢þ
>WENV170005124
AKYZ01000877
[AKYZ] insect gut metagenome;
882
974
+
Ser
TGA
[ENA]
¢þ
>WENV170005138
AKYZ01005525
[AKYZ] insect gut metagenome;
1224
1152
-
Arg
CCT
[ENA]
¢þ
>WENV170005136
AKYZ01004731
[AKYZ] insect gut metagenome;
1251
1176
-
Trp
CCA
[ENA]
¢þ
>WENV170005139
AKYZ01005648
[AKYZ] insect gut metagenome;
1314
1388
+
Cys
GCA
[ENA]
¢þ
>WENV170005135
AKYZ01002849
[AKYZ] insect gut metagenome;
1378
1454
+
Arg
TCT
[ENA]
¢þ
>WENV170005140
AKYZ01005740
[AKYZ] insect gut metagenome;
2452
2367
-
Leu
AAG
[ENA]
¢þ
>WENV170005119
AKYZ01000511
[AKYZ] insect gut metagenome;
4124
4049
-
Thr
CGT
[ENA]
¢þ
>WENV170005126
AKYZ01001900
[AKYZ] insect gut metagenome;
5144
5068
-
Arg
TCT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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