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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA gene List
[AKZA] insect gut metagenome;
HIT:
31 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170005164
AKZA01002226
[AKZA] insect gut metagenome;
1
74
+
Thr
GGT
[ENA]
¢þ
>WENV170005152
AKZA01001614
[AKZA] insect gut metagenome;
68
152
+
Tyr
GTA
[ENA]
¢þ
>WENV170005144
AKZA01001047
[AKZA] insect gut metagenome;
74
1
-
Gln
TTG
[ENA]
¢þ
>WENV170005151
AKZA01001578
[AKZA] insect gut metagenome;
77
2
-
His
GTG
[ENA]
¢þ
>WENV170005167
AKZA01002582
[AKZA] insect gut metagenome;
88
2
-
Ser
GGA
[ENA]
¢þ
>WENV170005170
AKZA01003588
[AKZA] insect gut metagenome;
98
24
-
Lys
CTT
[ENA]
¢þ
>WENV170005150
AKZA01001473
[AKZA] insect gut metagenome;
134
223
+
Ser
GGA
[ENA]
¢þ
>WENV170005141
AKZA01000096
[AKZA] insect gut metagenome;
213
296
+
Leu
TAG
[ENA]
¢þ
>WENV170005147
AKZA01001326
[AKZA] insect gut metagenome;
267
191
-
Pro
TGG
[ENA]
¢þ
>WENV170005153
AKZA01001614
[AKZA] insect gut metagenome;
270
344
+
Gly
TCC
[ENA]
¢þ
>WENV170005146
AKZA01001186
[AKZA] insect gut metagenome;
286
212
-
Arg
TCT
[ENA]
¢þ
>WENV170005165
AKZA01002531
[AKZA] insect gut metagenome;
349
420
+
His
GTG
[ENA]
¢þ
>WENV170005154
AKZA01001614
[AKZA] insect gut metagenome;
351
426
+
Thr
GGT
[ENA]
¢þ
>WENV170005143
AKZA01000834
[AKZA] insect gut metagenome;
354
271
-
Leu
TAA
[ENA]
¢þ
>WENV170005169
AKZA01003368
[AKZA] insect gut metagenome;
374
301
-
Ile
AAT
[ENA]
¢þ
>WENV170005148
AKZA01001450
[AKZA] insect gut metagenome;
441
365
-
Arg
CCT
[ENA]
¢þ
>WENV170005171
AKZA01003994
[AKZA] insect gut metagenome;
562
638
+
Arg
TCT
[ENA]
¢þ
>WENV170005168
AKZA01002781
[AKZA] insect gut metagenome;
827
899
+
Met
CAT
[ENA]
¢þ
>WENV170005142
AKZA01000830
[AKZA] insect gut metagenome;
1084
1008
-
Arg
CCT
[ENA]
¢þ
>WENV170005149
AKZA01001463
[AKZA] insect gut metagenome;
2236
2309
+
Arg
CCT
[ENA]
¢þ
>WENV170005145
AKZA01001096
[AKZA] insect gut metagenome;
2339
2421
+
Leu
GAG
[ENA]
¢þ
>WENV170005163
AKZA01001883
[AKZA] insect gut metagenome;
2452
2367
-
Leu
AAG
[ENA]
¢þ
>WENV170005166
AKZA01002581
[AKZA] insect gut metagenome;
4861
4787
-
Gly
TCC
[ENA]
¢þ
>WENV170005162
AKZA01001883
[AKZA] insect gut metagenome;
26566
26491
-
Cys
GCA
[ENA]
¢þ
>WENV170005155
AKZA01001883
[AKZA] insect gut metagenome;
37562
37638
+
Arg
TCT
[ENA]
¢þ
>WENV170005156
AKZA01001883
[AKZA] insect gut metagenome;
37644
37733
+
Ser
GGA
[ENA]
¢þ
>WENV170005157
AKZA01001883
[AKZA] insect gut metagenome;
37738
37813
+
Asn
GTT
[ENA]
¢þ
>WENV170005158
AKZA01001883
[AKZA] insect gut metagenome;
37820
37896
+
Pro
TGG
[ENA]
¢þ
>WENV170005159
AKZA01001883
[AKZA] insect gut metagenome;
37903
37976
+
Gln
TTG
[ENA]
¢þ
>WENV170005160
AKZA01001883
[AKZA] insect gut metagenome;
37984
38057
+
Trp
CCA
[ENA]
¢þ
>WENV170005161
AKZA01001883
[AKZA] insect gut metagenome;
38305
38379
+
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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