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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
79 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012504
ASRK01010365
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
52
127
+
Lys
TTT
[ENA]
¢þ
>WENV170012502
ASRK01009635
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
76
2
-
Phe
GAA
[ENA]
¢þ
>WENV170012492
ASRK01007291
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV170012478
ASRK01002225
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
82
1
-
Tyr
GTA
[ENA]
¢þ
>WENV170012439
ASRK01000071
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
1
-
Leu
TAA
[ENA]
¢þ
>WENV170012500
ASRK01009374
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
87
12
-
His
GTG
[ENA]
¢þ
>WENV170012482
ASRK01003157
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
102
175
+
Cys
GCA
[ENA]
¢þ
>WENV170012494
ASRK01008192
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
102
178
+
Ile
GAT
[ENA]
¢þ
>WENV170012467
ASRK01001495
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
103
16
-
Ser
GGA
[ENA]
¢þ
>WENV170012506
ASRK01010381
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
110
26
-
Leu
GAG
[ENA]
¢þ
>WENV170012473
ASRK01001808
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
113
188
+
Trp
CCA
[ENA]
¢þ
>WENV170012462
ASRK01000760
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
133
57
-
Pro
TGG
[ENA]
¢þ
>WENV170012435
ASRK01000026
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
144
60
-
Tyr
GTA
[ENA]
¢þ
>WENV170012474
ASRK01001820
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
148
75
-
Cys
GCA
[ENA]
¢þ
>WENV170012476
ASRK01002026
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
148
75
-
Pro
CGG
[ENA]
¢þ
>WENV170012491
ASRK01006787
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
157
231
+
Gly
TCC
[ENA]
¢þ
>WENV170012503
ASRK01009782
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
165
241
+
Met
CAT
[ENA]
¢þ
>WENV170012497
ASRK01008517
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
177
101
-
His
GTG
[ENA]
¢þ
>WENV170012458
ASRK01000579
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
184
109
-
Ala
GGC
[ENA]
¢þ
>WENV170012507
ASRK01010563
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
191
118
-
Pro
GGG
[ENA]
¢þ
>WENV170012483
ASRK01003197
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
192
116
-
Val
GAC
[ENA]
¢þ
>WENV170012505
ASRK01010365
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
192
267
+
Val
TAC
[ENA]
¢þ
>WENV170012501
ASRK01009635
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
202
117
-
Leu
TAA
[ENA]
¢þ
>WENV170012461
ASRK01000760
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
210
135
-
Asn
GTT
[ENA]
¢þ
>WENV170012486
ASRK01003938
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
213
138
-
Thr
GGT
[ENA]
¢þ
>WENV170012493
ASRK01007398
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
251
327
+
Met
CAT
[ENA]
¢þ
>WENV170012487
ASRK01004546
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
265
341
+
Met
CAT
[ENA]
¢þ
>WENV170012496
ASRK01008517
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
281
208
-
Arg
TCT
[ENA]
¢þ
>WENV170012464
ASRK01000972
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
295
370
+
Thr
TGT
[ENA]
¢þ
>WENV170012485
ASRK01003938
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
306
233
-
Gly
TCC
[ENA]
¢þ
>WENV170012495
ASRK01008192
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
307
382
+
Ala
TGC
[ENA]
¢þ
>WENV170012499
ASRK01009374
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
315
239
-
Pro
TGG
[ENA]
¢þ
>WENV170012489
ASRK01006662
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
320
396
+
Ile
GAT
[ENA]
¢þ
>WENV170012481
ASRK01003094
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
321
410
+
Ser
GGA
[ENA]
¢þ
>WENV170012498
ASRK01009070
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
323
238
-
Leu
TAA
[ENA]
¢þ
>WENV170012484
ASRK01003938
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
410
326
-
Tyr
GTA
[ENA]
¢þ
>WENV170012490
ASRK01006731
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
425
350
-
Arg
CCT
[ENA]
¢þ
>WENV170012488
ASRK01005438
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
511
587
+
Arg
CCG
[ENA]
¢þ
>WENV170012475
ASRK01001883
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
618
694
+
Arg
CCT
[ENA]
¢þ
>WENV170012459
ASRK01000584
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
845
920
+
Phe
GAA
[ENA]
¢þ
>WENV170012480
ASRK01002876
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
856
772
-
Leu
TAG
[ENA]
¢þ
>WENV170012477
ASRK01002225
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
882
795
-
Ser
CGA
[ENA]
¢þ
>WENV170012479
ASRK01002876
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
981
906
-
His
GTG
[ENA]
¢þ
>WENV170012471
ASRK01001788
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1186
1100
-
Leu
CAG
[ENA]
¢þ
>WENV170012472
ASRK01001792
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1213
1299
+
Leu
TAA
[ENA]
¢þ
>WENV170012466
ASRK01001326
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1291
1217
-
Gln
TTG
[ENA]
¢þ
>WENV170012470
ASRK01001777
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1350
1264
-
Leu
CAA
[ENA]
¢þ
>WENV170012463
ASRK01000772
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1353
1277
-
Met
CAT
[ENA]
¢þ
>WENV170012469
ASRK01001746
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1372
1296
-
Pro
GGG
[ENA]
¢þ
>WENV170012468
ASRK01001581
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1635
1559
-
Arg
TCT
[ENA]
¢þ
>WENV170012434
ASRK01000011
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1706
1781
+
Trp
CCA
[ENA]
¢þ
>WENV170012446
ASRK01000202
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1808
1733
-
Thr
GGT
[ENA]
¢þ
>WENV170012465
ASRK01000981
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1848
1762
-
Leu
GAG
[ENA]
¢þ
>WENV170012449
ASRK01000266
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2012
2088
+
Pro
GGG
[ENA]
¢þ
>WENV170012460
ASRK01000663
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2066
2142
+
Arg
CCG
[ENA]
¢þ
>WENV170012456
ASRK01000539
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2427
2503
+
Val
GAC
[ENA]
¢þ
>WENV170012453
ASRK01000365
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2935
3011
+
Met
CAT
[ENA]
¢þ
>WENV170012448
ASRK01000242
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3274
3189
-
Leu
AAG
[ENA]
¢þ
>WENV170012457
ASRK01000570
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3287
3364
+
Pro
TGG
[ENA]
¢þ
>WENV170012455
ASRK01000533
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3615
3544
-
Gln
TTG
[ENA]
¢þ
>WENV170012452
ASRK01000349
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4004
4079
+
Arg
TCG
[ENA]
¢þ
>WENV170012454
ASRK01000374
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4347
4420
+
Val
GAC
[ENA]
¢þ
>WENV170012450
ASRK01000302
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4450
4537
+
Ser
TGA
[ENA]
¢þ
>WENV170012451
ASRK01000306
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
6153
6077
-
Arg
ACG
[ENA]
¢þ
>WENV170012447
ASRK01000224
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
8573
8647
+
Gly
GCC
[ENA]
¢þ
>WENV170012442
ASRK01000097
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9713
9800
+
Leu
CAA
[ENA]
¢þ
>WENV170012445
ASRK01000136
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10836
10908
+
Thr
CGT
[ENA]
¢þ
>WENV170012430
ASRK01000005
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
13955
14039
+
Leu
GAG
[ENA]
¢þ
>WENV170012444
ASRK01000119
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
14288
14375
+
Ser
TGA
[ENA]
¢þ
>WENV170012443
ASRK01000117
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
14780
14855
+
Glu
TTC
[ENA]
¢þ
>WENV170012440
ASRK01000089
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17668
17743
+
Phe
GAA
[ENA]
¢þ
>WENV170012441
ASRK01000089
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17757
17834
+
Thr
TGT
[ENA]
¢þ
>WENV170012438
ASRK01000059
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
22806
22731
-
Cys
GCA
[ENA]
¢þ
>WENV170012437
ASRK01000059
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23942
23854
-
Ser
TGA
[ENA]
¢þ
>WENV170012436
ASRK01000051
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
28106
28196
+
Ser
GCT
[ENA]
¢þ
>WENV170012429
ASRK01000001
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31983
31899
-
Leu
CAA
[ENA]
¢þ
>WENV170012432
ASRK01000010
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
77493
77570
+
Pro
TGG
[ENA]
¢þ
>WENV170012433
ASRK01000010
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
77588
77664
+
His
GTG
[ENA]
¢þ
>WENV170012431
ASRK01000008
[ASRK] bioreactor metagenome; day 48 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
79363
79439
+
Arg
TCG
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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