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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA gene List
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
HIT:
71 sequence(s).
Download Sequence
View ClustalW result
The reliable tRNA genes
All candidate tRNA genes
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
>WENV170012556
ASRL01001388
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
35
111
+
Asp
GTC
[ENA]
¢þ
>WENV170012540
ASRL01000657
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
36
132
+
SeC(p)
TCA
[ENA]
¢þ
>WENV170012574
ASRL01003596
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
83
156
+
Arg
TCT
[ENA]
¢þ
>WENV170012567
ASRL01002127
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
95
5
-
Ser
GGA
[ENA]
¢þ
>WENV170012535
ASRL01000367
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
95
5
-
Ser
GCT
[ENA]
¢þ
>WENV170012570
ASRL01002892
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
99
4
-
SeC(p)
TCA
[ENA]
¢þ
>WENV170012537
ASRL01000594
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
103
179
+
Arg
ACG
[ENA]
¢þ
>WENV170012568
ASRL01002156
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
106
181
+
His
GTG
[ENA]
¢þ
>WENV170012559
ASRL01001587
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
113
188
+
Trp
CCA
[ENA]
¢þ
>WENV170012554
ASRL01001066
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
132
55
-
Pro
TGG
[ENA]
¢þ
>WENV170012542
ASRL01000709
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
133
57
-
Pro
TGG
[ENA]
¢þ
>WENV170012512
ASRL01000011
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
135
59
-
His
GTG
[ENA]
¢þ
>WENV170012573
ASRL01003158
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
148
76
-
Thr
TGT
[ENA]
¢þ
>WENV170012577
ASRL01003835
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
170
94
-
Ile
GAT
[ENA]
¢þ
>WENV170012547
ASRL01000950
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
175
100
-
Ala
GGC
[ENA]
¢þ
>WENV170012575
ASRL01003596
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
184
260
+
His
GTG
[ENA]
¢þ
>WENV170012546
ASRL01000809
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
185
110
-
Arg
CCT
[ENA]
¢þ
>WENV170012578
ASRL01004139
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
191
118
-
Pro
GGG
[ENA]
¢þ
>WENV170012560
ASRL01001662
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
207
131
-
Val
GAC
[ENA]
¢þ
>WENV170012541
ASRL01000709
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
210
135
-
Asn
GTT
[ENA]
¢þ
>WENV170012526
ASRL01000168
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
211
135
-
Arg
CCT
[ENA]
¢þ
>WENV170012557
ASRL01001548
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
215
288
+
Val
GAC
[ENA]
¢þ
>WENV170012511
ASRL01000011
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
230
153
-
Pro
TGG
[ENA]
¢þ
>WENV170012569
ASRL01002156
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
231
315
+
Leu
TAG
[ENA]
¢þ
>WENV170012545
ASRL01000804
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
236
146
-
Ser
GCT
[ENA]
¢þ
>WENV170012566
ASRL01002127
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
240
153
-
Ser
TGA
[ENA]
¢þ
>WENV170012576
ASRL01003705
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
246
322
+
Ile
GAT
[ENA]
¢þ
>WENV170012539
ASRL01000627
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
286
200
-
Leu
TAA
[ENA]
¢þ
>WENV170012534
ASRL01000358
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
319
408
+
Ser
GGA
[ENA]
¢þ
>WENV170012572
ASRL01003158
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
329
258
-
Glu
TTC
[ENA]
¢þ
>WENV170012571
ASRL01003158
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
411
340
-
Asn
GTT
[ENA]
¢þ
>WENV170012533
ASRL01000357
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
587
661
+
Gln
TTG
[ENA]
¢þ
>WENV170012536
ASRL01000549
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
850
763
-
Ser
CGA
[ENA]
¢þ
>WENV170012555
ASRL01001117
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
987
911
-
Arg
CCG
[ENA]
¢þ
>WENV170012561
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1033
1108
+
Gly
TCC
[ENA]
¢þ
>WENV170012562
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1112
1187
+
Lys
TTT
[ENA]
¢þ
>WENV170012563
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1205
1280
+
Thr
TGT
[ENA]
¢þ
>WENV170012564
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1300
1374
+
Glu
TTC
[ENA]
¢þ
>WENV170012565
ASRL01001856
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1415
1502
+
Leu
TAA
[ENA]
¢þ
>WENV170012558
ASRL01001576
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1848
1774
-
Arg
ACG
[ENA]
¢þ
>WENV170012553
ASRL01001030
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2070
1994
-
Pro
CGG
[ENA]
¢þ
>WENV170012548
ASRL01000952
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2391
2316
-
Thr
TGT
[ENA]
¢þ
>WENV170012552
ASRL01001027
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2849
2763
-
Leu
GAG
[ENA]
¢þ
>WENV170012549
ASRL01001025
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
2938
3022
+
Tyr
GTA
[ENA]
¢þ
>WENV170012550
ASRL01001025
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3042
3115
+
Gly
TCC
[ENA]
¢þ
>WENV170012551
ASRL01001025
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3135
3210
+
Thr
GGT
[ENA]
¢þ
>WENV170012543
ASRL01000767
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3587
3662
+
Arg
TCG
[ENA]
¢þ
>WENV170012544
ASRL01000784
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4391
4308
-
Leu
TAG
[ENA]
¢þ
>WENV170012531
ASRL01000313
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
4552
4476
-
Met
CAT
[ENA]
¢þ
>WENV170012530
ASRL01000298
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
5034
4959
-
Phe
GAA
[ENA]
¢þ
>WENV170012538
ASRL01000617
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
5352
5279
-
Cys
GCA
[ENA]
¢þ
>WENV170012532
ASRL01000314
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
7134
7058
-
Met
CAT
[ENA]
¢þ
>WENV170012510
ASRL01000009
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
7516
7440
-
Arg
TCG
[ENA]
¢þ
>WENV170012529
ASRL01000254
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
9304
9218
-
Leu
CAG
[ENA]
¢þ
>WENV170012528
ASRL01000183
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10903
10975
+
Thr
CGT
[ENA]
¢þ
>WENV170012527
ASRL01000169
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
10979
11066
+
Ser
TGA
[ENA]
¢þ
>WENV170012516
ASRL01000033
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
11146
11233
+
Leu
CAA
[ENA]
¢þ
>WENV170012509
ASRL01000005
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
13955
14039
+
Leu
GAG
[ENA]
¢þ
>WENV170012524
ASRL01000089
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17668
17743
+
Phe
GAA
[ENA]
¢þ
>WENV170012525
ASRL01000089
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
17757
17834
+
Thr
TGT
[ENA]
¢þ
>WENV170012517
ASRL01000042
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
20967
21042
+
Thr
GGT
[ENA]
¢þ
>WENV170012522
ASRL01000062
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
22805
22730
-
Cys
GCA
[ENA]
¢þ
>WENV170012523
ASRL01000066
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
22940
23015
+
Glu
TTC
[ENA]
¢þ
>WENV170012518
ASRL01000044
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23152
23076
-
Pro
GGG
[ENA]
¢þ
>WENV170012521
ASRL01000062
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
23941
23853
-
Ser
TGA
[ENA]
¢þ
>WENV170012519
ASRL01000059
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
25117
25207
+
Ser
GCT
[ENA]
¢þ
>WENV170012520
ASRL01000059
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
25228
25304
+
Met
CAT
[ENA]
¢þ
>WENV170012508
ASRL01000001
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
31995
31911
-
Leu
CAA
[ENA]
¢þ
>WENV170012515
ASRL01000026
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
35499
35423
-
Met
CAT
[ENA]
¢þ
>WENV170012514
ASRL01000026
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
36041
35965
-
Arg
TCT
[ENA]
¢þ
>WENV170012513
ASRL01000013
[ASRL] bioreactor metagenome; day 67 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
71783
71708
-
Trp
CCA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
View ClustalW result
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